RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 AWAT1Q58HT5 328 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 MEX3BQ6ZN04 569 aaKnown RBP12.17□□□□□ -0.46
HMGA1-203ENST00000374116 ZSCAN4Q8NAM6 433 aaPredicted RBP12.17□□□□□ -0.46
HMGA1-203ENST00000374116 DCUN1D4Q92564 292 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 SPSB4Q96A44 273 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 C1QTNF5Q9BXJ0 243 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 HRH4Q9H3N8 390 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 EHFQ9NZC4 300 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 SLC7A11Q9UPY5 501 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 PTPN13Q12923 2485 aa12.17□□□□□ -0.46
HMGA1-203ENST00000374116 IGKV1-27A0A075B6S5 117 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 A0A1W2PPH5 198 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 THBDP07204 575 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 ECI1P42126 302 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 LPAR6P43657 344 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 ZNF92Q03936 586 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 AADACL3Q5VUY0 350 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 PRSS54Q6PEW0 395 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 C6orf201Q7Z4U5 140 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 WFDC8Q8IUA0 241 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 EMG1Q92979 244 aaKnown RBP12.16□□□□□ -0.46
HMGA1-203ENST00000374116 SLAMF9Q96A28 289 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 TMEM230Q96A57 120 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 RTBDNQ9BSG5 229 aaPredicted RBP12.16□□□□□ -0.46
HMGA1-203ENST00000374116 IL36GQ9NZH8 169 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 HECTD1Q9ULT8 2610 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 ZNF816-ZNF321PA0A0X1KG74 233 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 C9JQL5 133 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 SPRY1O43609 319 aaPredicted RBP12.16□□□□□ -0.46
HMGA1-203ENST00000374116 HLA-HP01893 362 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 IGFBP2P18065 325 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 TGFBR3Q03167 851 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 DMRTC2Q8IXT2 367 aaPredicted RBP12.16□□□□□ -0.46
HMGA1-203ENST00000374116 WDR31Q8NA23 367 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 ZNF383Q8NA42 475 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 BCL2L2Q92843 193 aaPredicted RBP12.16□□□□□ -0.46
HMGA1-203ENST00000374116 RRNAD1Q96FB5 475 aaKnown RBP12.16□□□□□ -0.46
HMGA1-203ENST00000374116 CYYR1Q96J86 154 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 SLC5A7Q9GZV3 580 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 RAB18Q9NP72 206 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 ZNF701Q9NV72 531 aaPredicted RBP12.16□□□□□ -0.46
HMGA1-203ENST00000374116 STARD10Q9Y365 291 aa12.16□□□□□ -0.46
HMGA1-203ENST00000374116 CELSR2Q9HCU4 2923 aa12.15□□□□□ -0.46
HMGA1-203ENST00000374116 ANKHD1Q8IWZ3 2542 aaKnown RBP12.15□□□□□ -0.46
HMGA1-203ENST00000374116 C5orf51A6NDU8 294 aa12.15□□□□□ -0.46
HMGA1-203ENST00000374116 IFITM10A6NMD0 228 aa12.15□□□□□ -0.46
HMGA1-203ENST00000374116 SDCBPO00560 298 aaPredicted RBP12.15□□□□□ -0.46
HMGA1-203ENST00000374116 ANGPTL7O43827 346 aa12.15□□□□□ -0.46
HMGA1-203ENST00000374116 COX5BP10606 129 aa12.15□□□□□ -0.46
HMGA1-203ENST00000374116 S100A2P29034 98 aa12.15□□□□□ -0.46
HMGA1-203ENST00000374116 CD80P33681 288 aa12.15□□□□□ -0.46
HMGA1-203ENST00000374116 PKIAP61925 76 aa12.15□□□□□ -0.46
HMGA1-203ENST00000374116 NEU1Q99519 415 aa12.15□□□□□ -0.46
HMGA1-203ENST00000374116 OR5H1A6NKK0 313 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 SERPINF1P36955 418 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 SSX2Q16385 188 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 ETV3LQ6ZN32 361 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 OR1J1Q8NGS3 322 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 MAFIPQ8WZ33 124 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 MARS2Q96GW9 593 aaKnown RBP12.14□□□□□ -0.47
HMGA1-203ENST00000374116 POM121Q96HA1 1249 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 GAR1Q9NY12 217 aaKnown RBP12.14□□□□□ -0.47
HMGA1-203ENST00000374116 TMED3Q9Y3Q3 217 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 CENPEQ02224 2701 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 C13orf42A0A1B0GVH6 325 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 SEC14L6B5MCN3 397 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 H0YIZ8 118 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 MED6O75586 246 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 IFNA2P01563 188 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 GAPDHP04406 335 aaKnown RBP12.14□□□□□ -0.47
HMGA1-203ENST00000374116 CELA3BP08861 270 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 DTYMKP23919 212 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 ZNF83P51522 516 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 SUPT4H1P63272 117 aaKnown RBP12.14□□□□□ -0.47
HMGA1-203ENST00000374116 TAF9Q16594 264 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 TMEM268Q5VZI3 342 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 PLCXD3Q63HM9 321 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 ZNF787Q6DD87 383 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 HEPN1Q6WQI6 88 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 MYPOPQ86VE0 399 aaPredicted RBP12.14□□□□□ -0.47
HMGA1-203ENST00000374116 OSR2Q8N2R0 312 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 PIGCQ92535 297 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 AKR1E2Q96JD6 320 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 RSRP1Q9BUV0 290 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 ANXA10Q9UJ72 324 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 C14orf166Q9Y224 244 aaKnown RBP12.14□□□□□ -0.47
HMGA1-203ENST00000374116 SLC25A15Q9Y619 301 aa12.14□□□□□ -0.47
HMGA1-203ENST00000374116 CADP27708 2225 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 hCG_1809904A0A1W2PP81 198 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 A0A1W2PR64 198 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 A0A1W2PRV1 198 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 SIAH2O43255 324 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 GLRA1P23415 457 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 CHATP28329 748 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 HOXC12P31275 282 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 PRSS12P56730 875 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 UBE2NP61088 152 aaKnown RBP12.13□□□□□ -0.47
HMGA1-203ENST00000374116 SLC9A3R2Q15599 337 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 KRBOX4Q5JUW0 171 aa12.13□□□□□ -0.47
HMGA1-203ENST00000374116 TIMM23BQ5SRD1 257 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms