RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 FAM53AQ6NSI3 398 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-202ENST00000372405 DUX4L9Q6RFH8 374 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-202ENST00000372405 OR1L1Q8NH94 360 aa11.51□□□□□ -0.57
PTPRF-202ENST00000372405 GPHA2Q96T91 129 aa11.51□□□□□ -0.57
PTPRF-202ENST00000372405 DCTN5Q9BTE1 182 aa11.51□□□□□ -0.57
PTPRF-202ENST00000372405 RAB18Q9NP72 206 aa11.51□□□□□ -0.57
PTPRF-202ENST00000372405 DUX4Q9UBX2 424 aa11.51□□□□□ -0.57
PTPRF-202ENST00000372405 OR2W1Q9Y3N9 320 aa11.51□□□□□ -0.57
PTPRF-202ENST00000372405 CACNA1BQ00975 2339 aa11.51□□□□□ -0.57
PTPRF-202ENST00000372405 MEX3AA1L020 520 aaKnown RBP11.5□□□□□ -0.57
PTPRF-202ENST00000372405 RGS13O14921 159 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 ZG16O60844 167 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 HEXAP06865 529 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 CXCL2P19875 107 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 APOBEC3AP31941 199 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-202ENST00000372405 TMEM187Q14656 261 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 EFNB3Q15768 340 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 OR13A1Q8NGR1 328 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 MRGPRDQ8TDS7 321 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 SNX22Q96L94 193 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 PDCD10Q9BUL8 212 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 SLC5A7Q9GZV3 580 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 CCL28Q9NRJ3 127 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 DCHS2Q6V1P9 2916 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 C13orf42A0A1B0GVH6 325 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 K7N7A8 449 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 IGLV2-14P01704 120 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 TNFRSF1AP19438 455 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 SSTR2P30874 369 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 EDDM3AQ14507 147 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 C4orf17Q53FE4 359 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 FAM209AQ5JX71 171 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 GLYATL2Q8WU03 294 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 PPP1R1CQ8WVI7 109 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 LRRC46Q96FV0 321 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 OR10C1Q96KK4 312 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 TP53RKQ96S44 253 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 TMEM204Q9BSN7 226 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 CISD1Q9NZ45 108 aaKnown RBP11.5□□□□□ -0.57
PTPRF-202ENST00000372405 ITGB1BP2Q9UKP3 347 aa11.5□□□□□ -0.57
PTPRF-202ENST00000372405 ARID1AO14497 2285 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 C5orf51A6NDU8 294 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 OOEPA6NGQ2 149 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 VSTM5A8MXK1 200 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 GPR31O00270 319 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 HSD17B6O14756 317 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 MPPED1O15442 326 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 HBZP02008 142 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 HOXB5P09067 269 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 SSTR5P35346 364 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 RND3P61587 244 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 TEX36Q5VZQ5 186 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 GALNT11Q8NCW6 608 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 DEFB108BQ8NET1 73 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 LHFPL5Q8TAF8 219 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 ITLN2Q8WWU7 325 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-202ENST00000372405 MSI2Q96DH6 328 aaKnown RBP11.49□□□□□ -0.57
PTPRF-202ENST00000372405 SAP30LQ9HAJ7 183 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 RDH8Q9NYR8 311 aa11.49□□□□□ -0.57
PTPRF-202ENST00000372405 FXYD6-FXYD2A0A087WZ82 144 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 SWI5Q1ZZU3 235 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 ZNF672Q499Z4 452 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-202ENST00000372405 LRRC37A5PQ49AS3 106 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 GSG1LQ6UXU4 331 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 TBC1D26Q86UD7 250 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 ZNF565Q8N9K5 539 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 SDSLQ96GA7 329 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 GAFA1Q96PS6 74 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 HEXA-AS1Q9H8Q6 139 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 KCNIP1Q9NZI2 227 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 ODAMA1E959 279 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 HMSDA8MTL9 139 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 B9A039 149 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 C15orf65H3BRN8 121 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 MGST3O14880 152 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 ARPC5O15511 151 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 GYPAP02724 150 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 GNMTQ14749 295 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 LRTM2Q8N967 370 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 CCDC71LQ8N9Z2 235 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 OR52L2PQ8NGH6 319 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 OR10V1Q8NGI7 309 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 GON7Q9BXV9 100 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 NMES1Q9C002 83 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 SLA2Q9H6Q3 261 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 DYNLRB1Q9NP97 96 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 KCNIP3Q9Y2W7 256 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 ZFYVE26Q68DK2 2539 aa11.48□□□□□ -0.57
PTPRF-202ENST00000372405 C3orf85A0A1B0GTC6 90 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 PHF1O43189 567 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-202ENST00000372405 HSPA12AO43301 675 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 CEACAM6P40199 344 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 IL15RAQ13261 267 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 ZNF788Q6ZQV5 615 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 LIAT1Q6ZQX7 453 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 FAM219AQ8IW50 185 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 FAM185AQ8N0U4 392 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 ZNF561Q8N587 486 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 GALMQ96C23 342 aa11.47□□□□□ -0.57
PTPRF-202ENST00000372405 LURAP1Q96LR2 239 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms