RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 MIDNQ504T8 468 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 IGSF11Q5DX21 431 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 KCNMB2Q9Y691 235 aa12.86□□□□□ -0.35
COL17A1-201ENST00000353479 B3GALNT1O75752 331 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 ARG1P05089 322 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 LYZL2Q7Z4W2 148 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 DTD1Q8TEA8 209 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 TMUB1Q9BVT8 246 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 ELOVL5Q9NYP7 299 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 KLF7O75840 302 aaPredicted RBP12.85□□□□□ -0.35
COL17A1-201ENST00000353479 HBZP02008 142 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 INHBBP09529 407 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 NQO2P16083 231 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 BMI1P35226 326 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 OR4F17Q8NGA8 305 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 ORM2P19652 201 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 LYZP61626 148 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 RHOFQ9HBH0 211 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 V9GYS6 101 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 TRBV5-7A0A0A0MS05 114 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 PPP5D1E7EU14 171 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 ALX3O95076 343 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 DYNLT3P51808 116 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 TMEM33P57088 247 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 OR10A7Q8NGE5 316 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 ABHD14AQ9BUJ0 271 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 RNF24Q9Y225 148 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 IGKV1D-43A0A0B4J1Z2 117 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 SERTM2A0A1B0GWG4 89 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 CTRB1P17538 263 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 MMDQ15546 238 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 CTRB2Q6GPI1 263 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 BTNL8Q6UX41 500 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 SEZ6L2Q6UXD5 910 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 ZBTB34Q8NCN2 500 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 GPR137Q96N19 417 aa12.85□□□□□ -0.35
COL17A1-201ENST00000353479 ZNF552Q9H707 407 aaPredicted RBP12.85□□□□□ -0.35
COL17A1-201ENST00000353479 NKX2-6A6NCS4 301 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 K7N7A8 449 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 PIN1P1O15428 100 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 HPXP02790 462 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 CPN1P15169 458 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 MPV17P39210 176 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 ENDOGQ14249 297 aaKnown RBP12.84□□□□□ -0.35
COL17A1-201ENST00000353479 SPNS3Q6ZMD2 512 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 ZNF439Q8NDP4 499 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 VSIG4Q9Y279 399 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 CHEK1O14757 476 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 NDUFA6P56556 154 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 FAM219AQ8IW50 185 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 BLNKQ8WV28 456 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 SLC25A22Q9H936 323 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 CD200P41217 278 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 ERVFRD-1P60508 538 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 CLEC12BQ2HXU8 276 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 FAM57AQ8TBR7 257 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 CXorf58Q96LI9 332 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 OR51I2Q9H344 312 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 ARHGEF17Q96PE2 2063 aaPredicted RBP12.84□□□□□ -0.35
COL17A1-201ENST00000353479 H0Y8G0 127 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 ADRB1P08588 477 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 CXCL3P19876 107 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 UBE2V2Q15819 145 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 NCR3LG1Q68D85 454 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 PKIBQ9C010 78 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 GP6Q9HCN6 339 aa12.84□□□□□ -0.35
COL17A1-201ENST00000353479 SCTP09683 121 aa12.83□□□□□ -0.35
COL17A1-201ENST00000353479 RPL7L1Q6DKI1 246 aaKnown RBP12.83□□□□□ -0.35
COL17A1-201ENST00000353479 DOLPP1Q86YN1 238 aa12.83□□□□□ -0.35
COL17A1-201ENST00000353479 HILPDAQ9Y5L2 63 aa12.83□□□□□ -0.35
COL17A1-201ENST00000353479 RAB29O14966 203 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 ADAM11O75078 769 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 SCGB1D1O95968 90 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 FBP1P09467 338 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 NAAAQ02083 359 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 ACSF3Q4G176 576 aaPredicted RBP12.83□□□□□ -0.36
COL17A1-201ENST00000353479 C17orf82Q86X59 251 aaPredicted RBP12.83□□□□□ -0.36
COL17A1-201ENST00000353479 DPF1Q92782 380 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 Q9N2K0 584 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 PRNDQ9UKY0 176 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 DAOP14920 347 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 H3F3AP84243 136 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 C1orf100Q5SVJ3 147 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 SNX22Q96L94 193 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 MAP1LC3B2A6NCE7 125 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 IL24Q13007 206 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 ZNF154Q13106 437 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 ATP6V1FQ16864 119 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 ABHD14BQ96IU4 210 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 TXN2Q99757 166 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 MAP1LC3BQ9GZQ8 125 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 XKRY2A2RUG3 117 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 HLA-DQB1P01920 261 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 TIMM23BQ5SRD1 257 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 SHISA5Q8N114 240 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 OR1B1Q8NGR6 318 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 MARS2Q96GW9 593 aaKnown RBP12.83□□□□□ -0.36
COL17A1-201ENST00000353479 NUDT16L1Q9BRJ7 211 aaKnown RBP12.83□□□□□ -0.36
COL17A1-201ENST00000353479 DEPPQ9NTK1 212 aa12.83□□□□□ -0.36
COL17A1-201ENST00000353479 CEP250Q9BV73 2442 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms