RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ZNF83P51522 516 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 RIPPLY3P57055 190 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 KLF3P57682 345 aaPredicted RBP2.9□□□□□ -1.94
CSMD3-202ENST00000339701 ERVFRD-1P60508 538 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 RAC3P60763 192 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 TMEM176BQ3YBM2 270 aaPredicted RBP2.9□□□□□ -1.94
CSMD3-202ENST00000339701 LRRC37A5PQ49AS3 106 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 SLC48A1Q6P1K1 146 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 SCGB1D4Q6XE38 83 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 BHLHA15Q7RTS1 189 aaPredicted RBP2.9□□□□□ -1.94
CSMD3-202ENST00000339701 DTX2Q86UW9 622 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 NR2C2APQ86WQ0 139 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 PRSS3P2Q8NHM4 247 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 ABHD4Q8TB40 342 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 ZNF596Q8TC21 504 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 MOB3AQ96BX8 217 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 ATOH8Q96SQ7 321 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 KIR2DL4Q99706 377 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 PARLQ9H300 379 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 OR51B4Q9Y5P0 310 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 DMRT1Q9Y5R6 373 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 ZNF716A6NP11 495 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 ADAP1O75689 374 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 MELTFP08582 738 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 SNRPNP63162 240 aaKnown RBP2.9□□□□□ -1.94
CSMD3-202ENST00000339701 PDE6HQ13956 83 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 VAX1Q5SQQ9 334 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 TCTN3Q6NUS6 607 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 ADAMTS17Q8TE56 1095 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 DTD1Q8TEA8 209 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 LINC01599Q8WXQ3 324 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 SLC25A38Q96DW6 304 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 SPACA9Q96E40 222 aaPredicted RBP2.9□□□□□ -1.94
CSMD3-202ENST00000339701 YIPF6Q96EC8 236 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 AKIRIN1Q9H9L7 192 aaPredicted RBP2.9□□□□□ -1.94
CSMD3-202ENST00000339701 KCNE1BA0A087WTH5 132 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 M0R082 166 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 CDC14BO60729 498 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 PEX11BO96011 259 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 GPX4P36969 197 aaPredicted RBP2.9□□□□□ -1.94
CSMD3-202ENST00000339701 CAPZBP47756 277 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 XKR7Q5GH72 579 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 HMGN2P46Q86SG4 172 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 LRRTM3Q86VH5 581 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 OR10J6PQ8NGY7 276 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 OR1P1Q8NH06 330 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 ALKBH7Q9BT30 221 aaPredicted RBP2.9□□□□□ -1.94
CSMD3-202ENST00000339701 HSF4Q9ULV5 492 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 LSM2Q9Y333 95 aaKnown RBP2.9□□□□□ -1.94
CSMD3-202ENST00000339701 COX11Q9Y6N1 276 aa2.9□□□□□ -1.94
CSMD3-202ENST00000339701 TRAV38-1A0A0B4J264 116 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 ZAR1LA6NP61 321 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 NHLH2Q02577 135 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 PTPMT1Q8WUK0 201 aaPredicted RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 MARS2Q96GW9 593 aaKnown RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 PDCD1LG2Q9BQ51 273 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 LRRC61Q9BV99 259 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 KLK13Q9UKR3 277 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 A0A087WWC5 75 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 A6NIN4 97 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 PATE3B3GLJ2 98 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 RBFOX2O43251 390 aaKnown RBP eCLIP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 OR7C2O60412 319 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 TRGC2P03986 189 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 PVRP15151 417 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 RPL35P42766 123 aaKnown RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 CEACAM7Q14002 265 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 NNATQ16517 81 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 Q1RN00 199 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 PRAMEF5Q5TYX0 476 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 PRAMEF6Q5VXH4 476 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 MRM1Q6IN84 353 aaKnown RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 ZNF66Q6ZN08 573 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 DNM1P46Q6ZS02 220 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 SLC16A13Q7RTY0 426 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 SOSTQ9BQB4 213 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 LRRK1Q38SD2 2015 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 LOC390937A0A1W2PQ73 354 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 CLEC18AA5D8T8 446 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 FAM90A9PA6NNJ1 464 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 NME4O00746 187 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 OR2J3O76001 311 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 SOD1P00441 154 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 NGFRP08138 427 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 SDC1P18827 310 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 HOXD9P28356 352 aaPredicted RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 OTX1P32242 354 aaPredicted RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 POLR2IP36954 125 aaKnown RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 EFNB2P52799 333 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 ISL1P61371 349 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 GNB1P62873 340 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 GUCA2BQ16661 112 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 CXorf66Q5JRM2 361 aaPredicted RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 SFRP4Q6FHJ7 346 aaPredicted RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 PAQR9Q6ZVX9 377 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 FCRLAQ7L513 359 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 YRDCQ86U90 279 aaKnown RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 CLEC18CQ8NCF0 446 aa2.9□□□□□ -1.95
CSMD3-202ENST00000339701 NEU4Q8WWR8 484 aaPredicted RBP2.9□□□□□ -1.95
CSMD3-202ENST00000339701 HIST1H2BAQ96A08 127 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms