RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 LIAT1Q6ZQX7 453 aa5.9□□□□□ -1.46
SF3B1-201ENST00000335508 TRBV23-1A0A0A0MS06 115 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 HMSDA8MTL9 139 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 NKX2-5P52952 324 aaPredicted RBP5.9□□□□□ -1.47
SF3B1-201ENST00000335508 TAS2R45P59539 299 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 RPS11P62280 158 aaKnown RBP eCLIP5.9□□□□□ -1.47
SF3B1-201ENST00000335508 FAM27E3Q08E93 113 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 BATFQ16520 125 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 HIST3H3Q16695 136 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 ATP6V1FQ16864 119 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 KRBOX4Q5JUW0 171 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 SLC2A8Q9NY64 477 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 DKK4Q9UBT3 224 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 GPR132Q9UNW8 380 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 IGKV1D-43A0A0B4J1Z2 117 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 IGHV2OR16-5A0A0B4J2B6 119 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF729A6NN14 1252 aaPredicted RBP5.9□□□□□ -1.47
SF3B1-201ENST00000335508 TXNL1O43396 289 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 ARL3P36405 182 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 B3GALT5-AS1P59052 145 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 ERVFRD-1P60508 538 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 KLF9Q13886 244 aaPredicted RBP5.9□□□□□ -1.47
SF3B1-201ENST00000335508 NHLRC3Q5JS37 347 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 CCDC28AQ8IWP9 274 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 HPSE2Q8WWQ2 592 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 FAM234AQ9H0X4 552 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 KCNK7Q9Y2U2 307 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 TUSC2O75896 110 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 IGHV3-13P01766 116 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 CEACAM6P40199 344 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 MEF2CQ06413 473 aaPredicted RBP5.9□□□□□ -1.47
SF3B1-201ENST00000335508 IGFL2Q6UWQ7 119 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 HSD17B13Q7Z5P4 300 aaPredicted RBP5.9□□□□□ -1.47
SF3B1-201ENST00000335508 SLC25A42Q86VD7 318 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 UHRF2Q96PU4 802 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 VPS25Q9BRG1 176 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 LPAR2Q9HBW0 351 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 PITPNC1Q9UKF7 332 aa5.9□□□□□ -1.47
SF3B1-201ENST00000335508 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.89□□□□□ -1.47
SF3B1-201ENST00000335508 COX6B1P14854 86 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 P2RX3P56373 397 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 PRSS54Q6PEW0 395 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 BRICD5Q6PL45 260 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 RFLNBQ8N5W9 214 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 LILRB4Q8NHJ6 448 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 SCARB1Q8WTV0 552 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 EIF5A2Q9GZV4 153 aaKnown RBP5.89□□□□□ -1.47
SF3B1-201ENST00000335508 CLEC18AA5D8T8 446 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 M0R036 132 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 MMP7P09237 267 aaPredicted RBP5.89□□□□□ -1.47
SF3B1-201ENST00000335508 DEFA5Q01523 94 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 RHEBQ15382 184 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 TBR1Q16650 682 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 CLEC18CQ8NCF0 446 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 AQP3Q92482 292 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 PHYHIPLQ96FC7 376 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 PRNDQ9UKY0 176 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 RPH3ALQ9UNE2 315 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 C17orf100A8MU93 164 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 IQCF6A8MYZ5 107 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 SYNGR2O43760 224 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 SIX6O95475 246 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 FCGR3AP08637 254 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 ACKR3P25106 362 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 THBS3P49746 956 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF66Q6ZN08 573 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 COLCA1Q6ZS62 124 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 FAM89BQ8N5H3 189 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 OR10S1Q8NGN2 331 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 FAM216AQ8WUB2 273 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 SPSB4Q96A44 273 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 WDR89Q96FK6 387 aaPredicted RBP5.89□□□□□ -1.47
SF3B1-201ENST00000335508 GALNT14Q96FL9 552 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 GCM1Q9NP62 436 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 FOXH1O75593 365 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 CD74P04233 296 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 CEBPGP53567 150 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 BAXQ07812 192 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 BAMBIQ13145 260 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 CLINT1Q14677 625 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 OR2C3Q8N628 320 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 OR1S2Q8NGQ3 325 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 OR5P3Q8WZ94 311 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 TM2D1Q9BX74 207 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 POFUT1Q9H488 388 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 SH2D2AQ9NP31 389 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 JPT1Q9UK76 154 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 A0A1W2PP11 408 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 PRSS12P56730 875 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 OR9G1Q8NH87 305 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 MIOXQ9UGB7 285 aa5.89□□□□□ -1.47
SF3B1-201ENST00000335508 FAM90A26D6RGX4 464 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 FGF2P09038 288 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 OR4A8P0C604 315 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 S100PP25815 95 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 LGALS7P47929 136 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 HOXA1P49639 335 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 GNB2P62879 340 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 SPANXN5Q5MJ07 72 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 ADAM5Q6NVV9 412 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms