RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 RBMY1FQ15415 496 aaKnown RBP1.87□□□□□ -2.11
HMGB1-201ENST00000326004 CCDC58Q4VC31 144 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 KDM4DQ6B0I6 523 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 SLC16A13Q7RTY0 426 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 AKAP14Q86UN6 197 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 PLCZ1Q86YW0 608 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 WDFY1Q8IWB7 410 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 DOCK3Q8IZD9 2030 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 NECAP1Q8NC96 275 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 DEFB124Q8NES8 71 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 OR6N1Q8NGY5 312 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 LINC01560Q8TB33 94 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 SFXN5Q8TD22 340 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 RNASEH2CQ8TDP1 164 aaKnown RBP1.87□□□□□ -2.11
HMGB1-201ENST00000326004 RBMXL1Q96E39 390 aaKnown RBP1.87□□□□□ -2.11
HMGB1-201ENST00000326004 Q96MT0 163 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 RNF5Q99942 180 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 DHRS9Q9BPW9 319 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 SELENOSQ9BQE4 189 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF2Q9BSG1 426 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-201ENST00000326004 KRTAP4-3Q9BYR4 195 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 TMEM100Q9NV29 134 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 RBFOX1Q9NWB1 397 aaKnown RBP1.87□□□□□ -2.11
HMGB1-201ENST00000326004 GID8Q9NWU2 228 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 NDRG2Q9UN36 371 aaKnown RBP1.87□□□□□ -2.11
HMGB1-201ENST00000326004 TFR2Q9UP52 801 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 PPIL1Q9Y3C6 166 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 ABCB11O95342 1321 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 SPG11Q96JI7 2443 aa1.87□□□□□ -2.11
HMGB1-201ENST00000326004 DYSFO75923 2080 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 SETD2Q9BYW2 2564 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-201ENST00000326004 MIA3Q5JRA6 1907 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 IGLV3-12A0A075B6K2 115 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 IGKV1-27A0A075B6S5 117 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 TRAV19A0A0A6YYK7 116 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 TRAV8-4A0A0B4J246 113 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 KIR2DS1A0A191URI9 304 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 SPAARA0A1B0GVQ0 90 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF233A6NK53 670 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 PRAMEF26H0Y7S4 382 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 KLRC4-KLRK1H3BQV0 150 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 CDIPTO14735 213 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 PFDN6O15212 129 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 CHST10O43529 356 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 ADAP1O75689 374 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 ATP5HO75947 161 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 KLHL2O95198 593 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 KRT75O95678 551 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 TRBV12-3P01733 135 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 P01737 135 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 KRT7P08729 469 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 OCMP0CE72 109 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-201ENST00000326004 PAX6P26367 422 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 POLR2IP36954 125 aaKnown RBP1.86□□□□□ -2.11
HMGB1-201ENST00000326004 TALDO1P37837 337 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 EMP2P54851 167 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 AQP5P55064 265 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 OR10A3P58181 314 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 NAA20P61599 178 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 RPL23P62829 140 aaKnown RBP1.86□□□□□ -2.11
HMGB1-201ENST00000326004 CRADDP78560 199 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 DEFB103AP81534 67 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 PRKCDQ05655 676 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 INCA1Q0VD86 236 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 CDC20Q12834 499 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 RAB31Q13636 194 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 FLOT2Q14254 428 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 SNRNP35Q16560 246 aaKnown RBP1.86□□□□□ -2.11
HMGB1-201ENST00000326004 TMEM236Q5W0B7 351 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 SAXO2Q658L1 398 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 HBMQ6B0K9 141 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 PLEKHG7Q6ZR37 379 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 RTL4Q6ZR62 310 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 SSX7Q7RTT5 188 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 MRPL52Q86TS9 123 aaKnown RBP1.86□□□□□ -2.11
HMGB1-201ENST00000326004 GAPTQ8N292 157 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 C19orf18Q8NEA5 215 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 OR8G5Q8NG78 346 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 OR9A2Q8NGT5 310 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 OR13G1Q8NGZ3 307 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 OR10G6Q8NH81 332 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 OR2AE1Q8NHA4 323 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 NT5CQ8TCD5 201 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 NAT14Q8WUY8 206 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 NEURL3Q96EH8 262 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 OLFM3Q96PB7 478 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 VAT1Q99536 393 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 TMEM243Q9BU79 118 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 TIPINQ9BVW5 301 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 WDR54Q9H977 334 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 IMP3Q9NV31 184 aaKnown RBP1.86□□□□□ -2.11
HMGB1-201ENST00000326004 PAQR5Q9NXK6 330 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-201ENST00000326004 NKIRAS1Q9NYS0 192 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 ENOPH1Q9UHY7 261 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 SLC7A11Q9UPY5 501 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 SIGLEC7Q9Y286 467 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 HES2Q9Y543 173 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 LRRC42Q9Y546 428 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 PLXNB2O15031 1838 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 SIP14410 1827 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms