RNA–Protein interactions for RNA: ENST00000325599.12

SHQ1-201, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHQ1, Length 2,879 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-201ENST00000325599 FAM90A16PA6NEW6 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A20PA6NIJ5 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A8PA6NJQ4 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A7PA6NKC0 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 ZNF724A8MTY0 619 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A22PA8MWA6 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A12PA8MX19 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A5PA8MXJ8 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A23PA8MXZ1 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 TSPAN15O95858 294 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A15PP0C7V4 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A13PP0C7W8 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A14PP0C7W9 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 FAM90A24PP0C7X0 464 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 DANCRP0C864 163 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 OMGP23515 440 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 DVL1P1P54792 670 aaPredicted RBP13.97□□□□□ -0.17
SHQ1-201ENST00000325599 SELENOHQ8IZQ5 122 aaKnown RBP13.97□□□□□ -0.17
SHQ1-201ENST00000325599 SUMF2Q8NBJ7 301 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 GINS3Q9BRX5 216 aa13.97□□□□□ -0.17
SHQ1-201ENST00000325599 OPN3Q9H1Y3 402 aaPredicted RBP13.97□□□□□ -0.17
SHQ1-201ENST00000325599 PCNX2A6NKB5 2137 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 C21orf140B9A014 251 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 CDX4O14627 284 aaPredicted RBP13.96□□□□□ -0.17
SHQ1-201ENST00000325599 RHBDL1O75783 438 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 SP1P08047 785 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 PAX6P26367 422 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 PKIAP61925 76 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 EWSR1Q01844 656 aaKnown RBP eCLIP13.96□□□□□ -0.17
SHQ1-201ENST00000325599 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.96□□□□□ -0.17
SHQ1-201ENST00000325599 MCEMP1Q8IX19 187 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 SAXO1Q8IYX7 474 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 OR5P3Q8WZ94 311 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 BOD1Q96IK1 185 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 HIST1H2AAQ96QV6 131 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 TP53TG5Q9Y2B4 290 aa13.96□□□□□ -0.17
SHQ1-201ENST00000325599 ADAM20O43506 726 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 IL18BPO95998 194 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 MT-CO3P00414 261 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 SEC11BP0C7V7 166 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 SP9P0CG40 484 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 ARR3P36575 388 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 PLP2Q04941 152 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 GNMTQ14749 295 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 OR2T2Q6IF00 324 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 Q6ZS49 121 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 OR5A2Q8NGI9 324 aa13.96□□□□□ -0.18
SHQ1-201ENST00000325599 KIAA2026Q5HYC2 2103 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 IGSF23A1L1A6 192 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 MARCH11A6NNE9 402 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 HOXA5P20719 270 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 CA6P23280 308 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 CAMLGP49069 296 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 CACFD1Q9UGQ2 172 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 TRAV39A0A0B4J263 110 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 SSSCA1O60232 199 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 PRH1P02810 166 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 ZNF25P17030 456 aaPredicted RBP13.95□□□□□ -0.18
SHQ1-201ENST00000325599 SNCAP37840 140 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 NKX2-1P43699 371 aaPredicted RBP13.95□□□□□ -0.18
SHQ1-201ENST00000325599 CDX1P47902 265 aaPredicted RBP13.95□□□□□ -0.18
SHQ1-201ENST00000325599 AWAT1Q58HT5 328 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 RNFT1Q5M7Z0 435 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 OR2C3Q8N628 320 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 TMEM56Q96MV1 263 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 SCRT1Q9BWW7 348 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 C11orf1Q9H5F2 150 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 TMEM56-RWDD3S4R434 201 aa13.95□□□□□ -0.18
SHQ1-201ENST00000325599 TRAV24A0A0B4J272 114 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 IGHV3-64DA0A0J9YX35 117 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 A0A1W2PR80 420 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 TNFSF15O95150 251 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 MPV17LQ2QL34 196 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 MRPL30Q8TCC3 161 aaKnown RBP13.94□□□□□ -0.18
SHQ1-201ENST00000325599 SIRT7Q9NRC8 400 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 ATP23Q9Y6H3 246 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 PRR14LQ5THK1 2151 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 C7orf77A4D0Y5 90 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 TUSC2O75896 110 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 TNFRSF9Q07011 255 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 GFI1BQ5VTD9 330 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 PCSK4Q6UW60 755 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 TMEM182Q6ZP80 229 aaPredicted RBP13.94□□□□□ -0.18
SHQ1-201ENST00000325599 MYPOPQ86VE0 399 aaPredicted RBP13.94□□□□□ -0.18
SHQ1-201ENST00000325599 FAM185AQ8N0U4 392 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 OR10J5Q8NHC4 309 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 C19orf12Q9NSK7 152 aa13.94□□□□□ -0.18
SHQ1-201ENST00000325599 A0A1W2PPE2 198 aa13.93□□□□□ -0.18
SHQ1-201ENST00000325599 ANKRD30BLA7E2S9 258 aa13.93□□□□□ -0.18
SHQ1-201ENST00000325599 CDS2O95674 445 aa13.93□□□□□ -0.18
SHQ1-201ENST00000325599 APLNRP35414 380 aa13.93□□□□□ -0.18
SHQ1-201ENST00000325599 RPS10P46783 165 aaKnown RBP13.93□□□□□ -0.18
SHQ1-201ENST00000325599 CLN3Q13286 438 aa13.93□□□□□ -0.18
SHQ1-201ENST00000325599 MDS2Q8NDY4 140 aa13.93□□□□□ -0.18
SHQ1-201ENST00000325599 DIDO1Q9BTC0 2240 aaKnown RBP13.93□□□□□ -0.18
SHQ1-201ENST00000325599 GTF3C1Q12789 2109 aa13.93□□□□□ -0.18
SHQ1-201ENST00000325599 EREGO14944 169 aa13.93□□□□□ -0.18
SHQ1-201ENST00000325599 TMEM50AO95807 157 aa13.93□□□□□ -0.18
SHQ1-201ENST00000325599 SLC10A1Q14973 349 aa13.93□□□□□ -0.18
SHQ1-201ENST00000325599 RNPS1Q15287 305 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms