RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 NKX6-3A6NJ46 265 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 DUS4LO95620 317 aaKnown RBP11.74□□□□□ -0.53
SS18-201ENST00000269137 HEXAP06865 529 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 GZMHP20718 246 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 FXYD4P59646 89 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 EDDM3AQ14507 147 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 OR2AK2Q8NG84 335 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 MITD1Q8WV92 249 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 NEU4Q8WWR8 484 aaPredicted RBP11.74□□□□□ -0.53
SS18-201ENST00000269137 TOMM40LQ969M1 308 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 RSRP1Q9BUV0 290 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 DLL4Q9NR61 685 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 BOLA1Q9Y3E2 137 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 OR2W1Q9Y3N9 320 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 COL12A1Q99715 3063 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 RAI1Q7Z5J4 1906 aaPredicted RBP11.74□□□□□ -0.53
SS18-201ENST00000269137 NDUFA2O43678 99 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 HBZP02008 142 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 RPS2P15880 293 aaKnown RBP11.74□□□□□ -0.53
SS18-201ENST00000269137 NDUFA5Q16718 116 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 TPRX1Q8N7U7 411 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 ZNF565Q8N9K5 539 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 OR13A1Q8NGR1 328 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 MRGPRDQ8TDS7 321 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 IL1F10Q8WWZ1 152 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 GALMQ96C23 342 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 TMEM246Q9BRR3 403 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 TOLLIPQ9H0E2 274 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 CLEC4MQ9H2X3 399 aaPredicted RBP11.74□□□□□ -0.53
SS18-201ENST00000269137 PLSCR3Q9NRY6 295 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 OR6C3Q9NZP0 311 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 DSCAML1Q8TD84 2053 aa11.74□□□□□ -0.53
SS18-201ENST00000269137 C15orf65H3BRN8 121 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 RP2O75695 350 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 SFT2D2O95562 160 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 ANXA3P12429 323 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 SELLP14151 372 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 VAMP1P23763 118 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 COL8A2P25067 703 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 SUPT4H1P63272 117 aaKnown RBP11.73□□□□□ -0.53
SS18-201ENST00000269137 FAM216BQ8N7L0 139 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 OR1L1Q8NH94 360 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 C14orf79Q96F83 325 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 PHB2Q99623 299 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 OR1A1Q9P1Q5 309 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 MGAT4CQ9UBM8 478 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 KAAG1Q9UBP8 84 aa11.73□□□□□ -0.53
SS18-201ENST00000269137 A0A0B4J2A0 478 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 A0A1B0GW55 424 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 CRYM-AS1A6NIL9 109 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 TMPRSS2O15393 492 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 SPINT2O43291 252 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 DUX4L2P0CJ85 424 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 DUX4L3P0CJ86 424 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 DUX4L4P0CJ87 422 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 DUX4L5P0CJ88 424 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 DUX4L6P0CJ89 424 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 DUX4L7P0CJ90 424 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 CD34P28906 385 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 GNRHRP30968 328 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 IL2RGP31785 369 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 PIGPP57054 158 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 ABCA11PQ4W5N1 156 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 Q5BKY6 102 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 DUX4L9Q6RFH8 374 aaPredicted RBP11.72□□□□□ -0.53
SS18-201ENST00000269137 CLEC18BQ6UXF7 455 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 FAM185AQ8N0U4 392 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 PRR18Q8N4B5 295 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 ZNF436Q9C0F3 470 aaPredicted RBP11.72□□□□□ -0.53
SS18-201ENST00000269137 SLA2Q9H6Q3 261 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 DUX4Q9UBX2 424 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 SHPKQ9UHJ6 478 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 LAMP3Q9UQV4 416 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 IGKV1D-13A0A0B4J2D9 117 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 SMLR1H3BR10 107 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 HSPA12AO43301 675 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 OR2A4O95047 310 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 CGB3P0DN86 165 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 CGB7P0DN87 165 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 IGKV1-13P0DP09 117 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 HLA-GP17693 338 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 EDDM3BP56851 147 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 HTD2P86397 168 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 SRSF1Q07955 248 aaKnown RBP eCLIP11.72□□□□□ -0.53
SS18-201ENST00000269137 C11orf88Q6PI97 169 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 SGPP2Q8IWX5 399 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 ARL11Q969Q4 196 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 OR2A7Q96R45 310 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 DCTN5Q9BTE1 182 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 SLC5A7Q9GZV3 580 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 UBTD1Q9HAC8 227 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 SLC2A9Q9NRM0 540 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 RDH8Q9NYR8 311 aa11.72□□□□□ -0.53
SS18-201ENST00000269137 USF3Q68DE3 2245 aa11.71□□□□□ -0.53
SS18-201ENST00000269137 CEACAM6P40199 344 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 RND3P61587 244 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 C2orf68Q2NKX9 166 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 CCDC71LQ8N9Z2 235 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 UXS1Q8NBZ7 420 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 UBALD1Q8TB05 177 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms