RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 USP9YO00507 2555 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 LOC102723996A0A087X1L8 192 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF732B4DXR9 585 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 MGST3O14880 152 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF354AO60765 605 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF728P0DKX0 622 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 EGR4Q05215 589 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 GUSBP1Q15486 140 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 MSMO1Q15800 293 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 AWAT2Q6E213 333 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 OR2K2Q8NGT1 345 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 OLIG1Q8TAK6 271 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 YIPF6Q96EC8 236 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 RBPJLQ9UBG7 517 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 FBXL7Q9UJT9 491 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TCOF1Q13428 1488 aaKnown RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 RGPD4Q7Z3J3 1758 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 P2RX6O15547 441 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 KIR2DS2P43631 304 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SELENOWP63302 87 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 ST3GAL1Q11201 340 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 JOSD1Q15040 202 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 LAIR1Q6GTX8 287 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 FAM151AQ8WW52 585 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TSLPQ969D9 159 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TFCP2L1Q9NZI6 479 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 BCL9O00512 1426 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 FAM236AA0A1B0GUQ0 79 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 FAM236BA0A1B0GV22 79 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 A0A1W2PPC1 479 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PRR33A8MZF0 331 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 GCSHP23434 173 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TAS2R45P59539 299 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 FABP5Q01469 135 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 NRN1LQ496H8 165 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM97Q5BJF2 176 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 C1orf194Q5T5A4 169 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 METRNLQ641Q3 311 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 RBMXL1Q96E39 390 aaKnown RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SLC25A44Q96H78 314 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 COMMD5Q9GZQ3 224 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SMG9Q9H0W8 520 aaKnown RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 IDSB3KWA1 339 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 IDSP22304 550 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 GABRA3P34903 492 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SPINT3P49223 89 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PSMB2P49721 201 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF136P52737 540 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PSG3Q16557 428 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SGMS2Q8NHU3 365 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PPCDCQ96CD2 204 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 ROBO2Q9HCK4 1378 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TMSB15BA0A087X1C1 80 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TEX50A0A1B0GTY4 177 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TSPAN2O60636 221 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SCG5P05408 212 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PPP1CCP36873 323 aaKnown RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PTGDSP41222 190 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PSG6Q00889 435 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 Q1RN00 199 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 C6orf226Q5I0X4 101 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 CBLN3Q6UW01 205 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 Q6ZRG5 221 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SLC37A2Q8TED4 501 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 WNT10AQ9GZT5 417 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 MCTS1Q9ULC4 181 aaKnown RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TUBGCP6Q96RT7 1819 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SNHG28P0DPA3 235 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 ELK1P19419 428 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 CAV3P56539 151 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PNRC1Q12796 327 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 DHRS2Q13268 280 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TBC1D28Q2M2D7 210 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 GLYATL3Q5SZD4 288 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 MRPL14Q6P1L8 145 aaKnown RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 OR4C12Q96R67 309 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 GPR88Q9GZN0 384 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 IL36AQ9UHA7 158 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PTPRJQ12913 1337 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PPP6CO00743 305 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PLPP3O14495 311 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SH2D1BO14796 132 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 RPS20P60866 119 aaKnown RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 VN1R2Q8NFZ6 395 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 GPR32P1Q8NGA4 272 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 NEUROG1Q92886 237 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 LRRC61Q9BV99 259 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TLNRD1Q9H1K6 362 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 EGLN3Q9H6Z9 239 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 OR2W5A6NFC9 320 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 HHLA1C9JL84 531 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 ERVK-16P61578 105 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 EDDM3AQ14507 147 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PWWP2BQ6NUJ5 590 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 ACP7Q6ZNF0 438 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 COX18Q8N8Q8 333 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 REG4Q9BYZ8 158 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 LHX3Q9UBR4 397 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SIT1Q9Y3P8 196 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 LTN1O94822 1766 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms