RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ESDP10768 282 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 RPL7P18124 248 aaKnown RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 BTCP35070 178 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 LTC4SQ16873 150 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 HES3Q5TGS1 186 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 Q8WTZ3 238 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 RND1Q92730 232 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 SPSB4Q96A44 273 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 CNRIP1Q96F85 164 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 KLK13Q9UKR3 277 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 INSL6Q9Y581 213 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 SPCS1Q9Y6A9 102 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 PAGE4O60829 102 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 LDB3O75112 727 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 HOXB2P14652 356 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 PAPPA-AS1Q5QFB9 102 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 C17orf78Q8N4C9 275 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 OR2K2Q8NGT1 345 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 RELTQ969Z4 430 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 TXNRD2Q9NNW7 524 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 WSB2Q9NYS7 404 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 LINC01553A4QN01 128 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 IQCF3P0C7M6 154 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 CEACAM1P13688 526 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 GPR3P46089 330 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 COMPP49747 757 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-220ENST00000641603 CT83Q5H943 113 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 TTC9CQ8N5M4 171 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 SCCPDHQ8NBX0 429 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 GDF15Q99988 308 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 FRRS1LQ9P0K9 344 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 MPC1Q9Y5U8 109 aa4.11□□□□□ -1.75
SCN1A-220ENST00000641603 H3BML4 177 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 EML2O95834 649 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 PI3P19957 117 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 PPP1CAP62136 330 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 NNATQ16517 81 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 TCTN1Q2MV58 587 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 VMA21Q3ZAQ7 101 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 SAXO1Q8IYX7 474 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 C10orf126Q8N4M7 172 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF740Q8NDX6 193 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 MYOZ3Q8TDC0 251 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 FAM117AQ9C073 453 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 WNT5BQ9H1J7 359 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 CD207Q9UJ71 328 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 PRSS38A1L453 326 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 FLT3LGP49771 235 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 UBE2L3P68036 154 aaKnown RBP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 COL10A1Q03692 680 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 PRICKLE4Q2TBC4 344 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 RNFT1Q5M7Z0 435 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF774Q6NX45 483 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 MORN3Q6PF18 240 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 FBXL14Q8N1E6 418 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 CADM4Q8NFZ8 388 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 PIGTQ969N2 578 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 OPRM1P35372 400 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 GNG3P63215 75 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 SRSF9Q13242 221 aaKnown RBP eCLIP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 OR4C12Q96R67 309 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 MESP1Q9BRJ9 268 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 APOBEC3BQ9UH17 382 aaKnown RBP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 LAMB2P55268 1798 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 TNFSF11O14788 317 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 TNFSF12O43508 249 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 PRSS1P07477 247 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 FAM157BP0CG42 384 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF708P17019 499 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 MFAP2P55001 183 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 NR2C2APQ86WQ0 139 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 OR1F12Q8NHA8 337 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 FAM131CQ96AQ9 280 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 GPA33Q99795 319 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 ZPBPQ9BS86 351 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 MRPL27Q9P0M9 148 aaKnown RBP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 IAPPP10997 89 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM50BP56557 158 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 FGF13Q92913 245 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 ELOVL5Q9NYP7 299 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 H0YL77 283 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 F12P00748 615 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 FAHP16930 419 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 ATRAIDQ6UW56 229 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 LRTM2Q8N967 370 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 NAT6Q93015 286 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 MENTQ9BUN1 341 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 NPVFQ9HCQ7 196 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 C17orf51A8MQB3 221 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 RBFOX2O43251 390 aaKnown RBP eCLIP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 CD5LO43866 347 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 TMEM215Q68D42 235 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 SPPL3Q8TCT6 385 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 TAF15Q92804 592 aaKnown RBP eCLIP4.1□□□□□ -1.75
SCN1A-220ENST00000641603 STATHP02808 62 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 F11P03951 625 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 LYL1P12980 280 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 OTX2P32243 289 aa4.1□□□□□ -1.75
SCN1A-220ENST00000641603 ZNF880Q6PDB4 577 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms