RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CYP4Z1Q86W10 505 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 GID4Q8IVV7 300 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 FAM58AQ8N1B3 248 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SPICQ8N5J4 248 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TRIML2Q8N7C3 387 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 YIPF7Q8N8F6 280 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 C9orf163Q8N9P6 203 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 GATD1Q8NB37 220 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 OR4P4Q8NGL7 312 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 OR6K3Q8NGY3 331 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 OR4X1Q8NH49 305 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 OR51Q1Q8NH59 317 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ANGPTL6Q8NI99 470 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 NDNFQ8TB73 568 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 C16orf78Q8WTQ4 265 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TWIST2Q8WVJ9 160 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 C22orf15Q8WYQ4 148 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 HIST1H2BAQ96A08 127 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CERS2Q96G23 380 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CPB2Q96IY4 423 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CAPZA3Q96KX2 299 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 Q96M85 177 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 GPR22Q99680 433 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 NAA38Q9BRA0 125 aaKnown RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 UTP23Q9BRU9 249 aaKnown RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SUCNR1Q9BXA5 334 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SPZ1Q9BXG8 430 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CDCA4Q9BXL8 241 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 MAP1LC3CQ9BXW4 147 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 PECRQ9BY49 303 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TM6SF2Q9BZW4 377 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 C11orf1Q9H5F2 150 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ARMC7Q9H6L4 198 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 CRLF2Q9HC73 371 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ACOT13Q9NPJ3 140 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ZC4H2Q9NQZ6 224 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SDHAF3Q9NRP4 125 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 KCNIP2Q9NS61 270 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TXNL4BQ9NX01 149 aaKnown RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TAS2R9Q9NYW1 312 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 DOK5Q9P104 306 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 C14orf166Q9Y224 244 aaKnown RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 SLC22A14Q9Y267 594 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 KPTNQ9Y664 436 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 PRKDCP78527 4128 aaKnown RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 BRCA1P38398 1863 aaKnown RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ARAP3Q8WWN8 1544 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 MUC2Q02817 5179 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 DMBT1Q9UGM3 2413 aaPredicted RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ARHGAP32A7KAX9 2087 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 ADAMTSL1Q8N6G6 1762 aa-0.04□□□□□ -2.42
VPS35-212ENST00000640313 TRPM3Q9HCF6 1732 aaPredicted RBP-0.04□□□□□ -2.42
VPS35-212ENST00000640313 NCKAP5O14513 1909 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 INTS1Q8N201 2190 aaKnown RBP-0.05□□□□□ -2.42
VPS35-212ENST00000640313 PTPRJQ12913 1337 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 USP42Q9H9J4 1324 aaKnown RBP-0.05□□□□□ -2.42
VPS35-212ENST00000640313 ZNF532Q9HCE3 1301 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 IGSF10Q6WRI0 2623 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 CACNA1EQ15878 2313 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 TMSB15BA0A087X1C1 80 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 A0A1B0GTQ1 180 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 GOLGA6L7A0A1B0GV03 622 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 A0A1W2PRF3 423 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 A0A1W2PRG6 482 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 A0A1W2PRM7 423 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 DHRS12A0PJE2 317 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 VPS37CA5D8V6 355 aaPredicted RBP-0.05□□□□□ -2.42
VPS35-212ENST00000640313 C11orf86A6NJI1 115 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 OR5K4A6NMS3 321 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 CENPXA8MT69 81 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 A8MWP6 167 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 SEC14L6B5MCN3 397 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 F8VP50 259 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 H3BPC8 53 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 H3BSA7 217 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 H7C2Y5 167 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 PRMT5O14744 637 aaPredicted RBP-0.05□□□□□ -2.42
VPS35-212ENST00000640313 PHYHO14832 338 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 FGF16O43320 207 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 EEF1E1O43324 174 aaKnown RBP-0.05□□□□□ -2.42
VPS35-212ENST00000640313 GNRH2O43555 120 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 GATCO43716 136 aaKnown RBP-0.05□□□□□ -2.42
VPS35-212ENST00000640313 MRPS14O60783 128 aaKnown RBP-0.05□□□□□ -2.42
VPS35-212ENST00000640313 LY6HO94772 140 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 VAPBO95292 243 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 GYPCP04921 128 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 ZNF728P0DKX0 622 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 SCGB1C2P0DMR2 95 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 SLC2A1P11166 492 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 RALBP11234 206 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 CTSEP14091 401 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 PRKACAP17612 351 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 MSR1P21757 451 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 CCNOP22674 350 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 CPN2P22792 545 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 S100A2P29034 98 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 CRABP1P29762 137 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 GTF2H1P32780 548 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 SPAM1P38567 509 aa-0.05□□□□□ -2.42
VPS35-212ENST00000640313 LPAR6P43657 344 aa-0.05□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms