RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PIGYQ3MUY2 71 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 SLC25A30Q5SVS4 291 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 ELP2Q6IA86 826 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 SERPINA12Q8IW75 414 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 IZUMO1Q8IYV9 350 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 Q8NFD4 153 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 OR5D14Q8NGL3 314 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 OR10K1Q8NGX5 313 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 C4orf3Q8WVX3 66 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 RBMXL1Q96E39 390 aaKnown RBP15.16■□□□□ 0.02
CLN3-262ENST00000637699 RNFT2Q96EX2 444 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 PELI1Q96FA3 418 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 RASL11BQ9BPW5 248 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 PLSCR3Q9NRY6 295 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 FAM118AQ9NWS6 357 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 SMAD5-AS1Q9Y6J3 95 aa15.16■□□□□ 0.02
CLN3-262ENST00000637699 J3QRE1 110 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 VDAC1P21796 283 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 IL13RA2Q14627 380 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 SATL1Q86VE3 508 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 SBSPONQ8IVN8 264 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 OR11H1Q8NG94 326 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 UBALD1Q8TB05 177 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 C4orf36Q96KX1 117 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 RCHY1Q96PM5 261 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 S1PR3Q99500 378 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 HSPB9Q9BQS6 159 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 GAR1Q9NY12 217 aaKnown RBP15.15■□□□□ 0.02
CLN3-262ENST00000637699 ZNF581Q9P0T4 197 aa15.15■□□□□ 0.02
CLN3-262ENST00000637699 ZNF736B4DX44 427 aaPredicted RBP15.14■□□□□ 0.01
CLN3-262ENST00000637699 IGHG4P01861 327 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 KCNJ3P48549 501 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 PAX5Q02548 391 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 CFHR3Q02985 330 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 FHL3Q13643 280 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 RSU1Q15404 277 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 FAM53AQ6NSI3 398 aaPredicted RBP15.14■□□□□ 0.01
CLN3-262ENST00000637699 C10orf67Q8IYJ2 551 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 SUMF2Q8NBJ7 301 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 PXT1Q8NFP0 134 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 TNFAIP8L1Q8WVP5 186 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 RTN4IP1Q8WWV3 396 aaPredicted RBP15.14■□□□□ 0.01
CLN3-262ENST00000637699 GPER1Q99527 375 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 DPCDQ9BVM2 203 aaPredicted RBP15.14■□□□□ 0.01
CLN3-262ENST00000637699 FAM192AQ9GZU8 254 aa15.14■□□□□ 0.01
CLN3-262ENST00000637699 SORL1Q92673 2214 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 SDCBPO00560 298 aaPredicted RBP15.13■□□□□ 0.01
CLN3-262ENST00000637699 GABRPO00591 440 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 HTR3BO95264 441 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 MOSP00540 346 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 GABRB1P18505 474 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 GZMHP20718 246 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 PQLC1Q8N2U9 271 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 PARP16Q8N5Y8 322 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 ACBD7Q8N6N7 88 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 TMEM104Q8NE00 496 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 ARL11Q969Q4 196 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 KCTD7Q96MP8 289 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 C9orf16Q9BUW7 83 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 GMPPBQ9Y5P6 360 aa15.13■□□□□ 0.01
CLN3-262ENST00000637699 IGHV3-43A0A0B4J1X8 118 aa15.12■□□□□ 0.01
CLN3-262ENST00000637699 IGHV3-43DP0DP04 118 aa15.12■□□□□ 0.01
CLN3-262ENST00000637699 PSMB8P28062 276 aa15.12■□□□□ 0.01
CLN3-262ENST00000637699 CD1BP29016 333 aa15.12■□□□□ 0.01
CLN3-262ENST00000637699 SOX6P35712 828 aa15.12■□□□□ 0.01
CLN3-262ENST00000637699 F2RL1P55085 397 aa15.12■□□□□ 0.01
CLN3-262ENST00000637699 MEDAGQ5VYS4 303 aa15.12■□□□□ 0.01
CLN3-262ENST00000637699 OVCH2Q7RTZ1 564 aa15.12■□□□□ 0.01
CLN3-262ENST00000637699 CCDC107Q8WV48 283 aa15.12■□□□□ 0.01
CLN3-262ENST00000637699 TSEN15Q8WW01 171 aaKnown RBP15.12■□□□□ 0.01
CLN3-262ENST00000637699 DHDHQ9UQ10 334 aa15.12■□□□□ 0.01
CLN3-262ENST00000637699 EXOGQ9Y2C4 368 aaKnown RBP15.12■□□□□ 0.01
CLN3-262ENST00000637699 C15orf65H3BRN8 121 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 MAGEB3O15480 346 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 OR7C1O76099 320 aaPredicted RBP15.11■□□□□ 0.01
CLN3-262ENST00000637699 LYL1P12980 280 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 RAB3AP20336 220 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 IL3RAP26951 378 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 INSL3P51460 131 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 LHFPL3Q86UP9 236 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 FAM71E2Q8N5Q1 922 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 LINC00311Q8N616 119 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 OR8H1Q8NGG4 311 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 OR51A2Q8NGJ7 313 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 OR52M1Q8NGK5 317 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 OR1N2Q8NGR9 330 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 ST6GALNAC6Q969X2 333 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 LGALS12Q96DT0 336 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 CPNE2Q96FN4 548 aaPredicted RBP15.11■□□□□ 0.01
CLN3-262ENST00000637699 OR5B12Q96R08 314 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 PDCD1LG2Q9BQ51 273 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 ISG20L2Q9H9L3 353 aaKnown RBP15.11■□□□□ 0.01
CLN3-262ENST00000637699 GNB4Q9HAV0 340 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 ST3GAL6Q9Y274 331 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 BIRC6Q9NR09 4857 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 DNAH1Q9P2D7 4330 aa15.11■□□□□ 0.01
CLN3-262ENST00000637699 TMEM30CPA0ZSE6 113 aa15.1■□□□□ 0.01
CLN3-262ENST00000637699 CDRT1O95170 752 aa15.1■□□□□ 0.01
CLN3-262ENST00000637699 FAM27D1Q5T7N8 215 aa15.1■□□□□ 0.01
CLN3-262ENST00000637699 ASPHD1Q5U4P2 390 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms