RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 TBX15Q96SF7 602 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 OCSTAMPQ9BR26 566 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 FAM234AQ9H0X4 552 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 SIRPDQ9H106 197 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 ONECUT1Q9UBC0 465 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 MTFP1Q9UDX5 166 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 MGAT4AQ9UM21 535 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 KCNK7Q9Y2U2 307 aa8.12□□□□□ -1.11
CLN3-261ENST00000637686 MXRA5Q9NR99 2828 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 TRAV24A0A0B4J272 114 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 TRAV40A0A0B4J280 105 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 A0A1W2PQ09 198 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 MCRIP1C9JLW8 97 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 SLC33A1O00400 549 aaPredicted RBP8.11□□□□□ -1.11
CLN3-261ENST00000637686 DEGS1O15121 323 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 OR2H2O95918 312 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 TK1P04183 234 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 GSTT2BP0CG30 244 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 NAT1P18440 290 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 TBPP20226 339 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 DUSP1P28562 367 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 GNG2P59768 71 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 AP3S2P59780 193 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 SCGB2A2Q13296 93 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 ZNF554Q86TJ5 538 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 BCL6BQ8N143 479 aaPredicted RBP8.11□□□□□ -1.11
CLN3-261ENST00000637686 ASCC1Q8N9N2 400 aaKnown RBP8.11□□□□□ -1.11
CLN3-261ENST00000637686 OR5D13Q8NGL4 314 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 C8orf46Q8TAG6 207 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 SNX22Q96L94 193 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 SLC6A7Q99884 636 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 C7orf50Q9BRJ6 194 aaKnown RBP8.11□□□□□ -1.11
CLN3-261ENST00000637686 ZNF69Q9UC07 566 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 MRPS7Q9Y2R9 242 aaKnown RBP8.11□□□□□ -1.11
CLN3-261ENST00000637686 SOX21Q9Y651 276 aaPredicted RBP8.11□□□□□ -1.11
CLN3-261ENST00000637686 KPTNQ9Y664 436 aa8.11□□□□□ -1.11
CLN3-261ENST00000637686 TRBV23-1A0A0A0MS06 115 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 TMEM82A0PJX8 343 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 FUOMA2VDF0 154 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 TMEM235A6NFC5 223 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 K7N7A8 449 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 TCF21O43680 179 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 ZNF737O75373 536 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 RBBP9O75884 186 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 DIRAS3O95661 229 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 NAPSAO96009 420 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 CD3GP09693 182 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 IL7P13232 177 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 ZNF44P15621 663 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 GNB3P16520 340 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 FPR2P25090 351 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 RCVRNP35243 200 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 RPL31P62899 125 aaKnown RBP8.1□□□□□ -1.11
CLN3-261ENST00000637686 MRPS15P82914 257 aaKnown RBP8.1□□□□□ -1.11
CLN3-261ENST00000637686 PRB3Q04118 309 aaPredicted RBP8.1□□□□□ -1.11
CLN3-261ENST00000637686 SCN1BQ07699 218 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 DYRK1AQ13627 763 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 KIAA2026Q5HYC2 2103 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 TRIQKQ629K1 86 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 MOB1BQ7L9L4 216 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 VMO1Q7Z5L0 202 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 SNX29P2Q8IUI4 249 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 PDZD9Q8IXQ8 264 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 IZUMO1Q8IYV9 350 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 FAM185AQ8N0U4 392 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 BPIFB2Q8N4F0 458 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 KIR3DL3Q8N743 410 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 SUMF2Q8NBJ7 301 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 OR52I2Q8NH67 350 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 LHX4Q969G2 390 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 DMRTB1Q96MA1 342 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 CMSS1Q9BQ75 279 aaKnown RBP8.1□□□□□ -1.11
CLN3-261ENST00000637686 SULT4A1Q9BR01 284 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 THAP7Q9BT49 309 aaPredicted RBP8.1□□□□□ -1.11
CLN3-261ENST00000637686 DPCDQ9BVM2 203 aaPredicted RBP8.1□□□□□ -1.11
CLN3-261ENST00000637686 MS4A7Q9GZW8 240 aaPredicted RBP8.1□□□□□ -1.11
CLN3-261ENST00000637686 C12orf4Q9NQ89 552 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 C19orf12Q9NSK7 152 aa8.1□□□□□ -1.11
CLN3-261ENST00000637686 CENPVL3A0A0U1RRI6 287 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 J3QRK9 145 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 SIRPB1O00241 398 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 MGST3O14880 152 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 PSPNO60542 156 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 CSF1P09603 554 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 ERP29P30040 261 aaKnown RBP8.09□□□□□ -1.11
CLN3-261ENST00000637686 DLX1P56177 255 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 EDDM3BP56851 147 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 DEFA1P59665 94 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 DEFA3P59666 94 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 DGCR2P98153 550 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 ARFRP1Q13795 201 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 PDCD1Q15116 288 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 BAK1Q16611 211 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 ACTBL2Q562R1 376 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 PAN3Q58A45 887 aaKnown RBP8.09□□□□□ -1.11
CLN3-261ENST00000637686 NKAPLQ5M9Q1 402 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 ATAD3CQ5T2N8 411 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 GPR157Q5UAW9 335 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 RUSC1-AS1Q66K80 236 aa8.09□□□□□ -1.11
CLN3-261ENST00000637686 TMEM200BQ69YZ2 307 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms