RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MGMTP16455 207 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 DYNLT3P51808 116 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 QRFPP83859 136 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 LY6EQ16553 131 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 KRBOX4Q5JUW0 171 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 TRAPPC6BQ86SZ2 158 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 OR51D1Q8NGF3 324 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 CLEC7AQ9BXN2 247 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 CST11Q9H112 138 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 IFT22Q9H7X7 185 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 RAB18Q9NP72 206 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 ZNF581Q9P0T4 197 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 STEAP1Q9UHE8 339 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 GEMIN2O14893 280 aaKnown RBP15.53■□□□□ 0.08
CLN3-260ENST00000637578 SLC2A2P11168 524 aaPredicted RBP15.53■□□□□ 0.08
CLN3-260ENST00000637578 ARSBP15848 533 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 KIR2DS4P43632 304 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 VBP1P61758 197 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 DYNC1I2Q13409 638 aaKnown RBP15.53■□□□□ 0.08
CLN3-260ENST00000637578 SSX2Q16385 188 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 CTF1Q16619 201 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 OR52W1Q6IF63 320 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 FAM3DQ96BQ1 224 aa15.53■□□□□ 0.08
CLN3-260ENST00000637578 MRPS24Q96EL2 167 aaKnown RBP15.53■□□□□ 0.08
CLN3-260ENST00000637578 A0A0B4J203 849 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 TMEM14DPA8MWL7 114 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 CHST1O43916 411 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 MPIG6BO95866 241 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 CDK2P24941 298 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 CD34P28906 385 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 UNC119Q13432 240 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 ATXN7L3Q14CW9 347 aaPredicted RBP15.52■□□□□ 0.07
CLN3-260ENST00000637578 C17orf58Q2M2W7 97 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 PRAMEF5Q5TYX0 476 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 SFXN4Q6P4A7 337 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 BRICD5Q6PL45 260 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 BAIAP2L2Q6UXY1 529 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 RTN4RL2Q86UN3 420 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 ABHD12Q8N2K0 398 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 OR4P4Q8NGL7 312 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 KCNG3Q8TAE7 436 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 SELENOIQ9C0D9 397 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 RANBP3Q9H6Z4 567 aaPredicted RBP15.52■□□□□ 0.07
CLN3-260ENST00000637578 LINC00574Q9H8X3 128 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 OR6C3Q9NZP0 311 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 TCF19Q9Y242 345 aa15.52■□□□□ 0.07
CLN3-260ENST00000637578 KIAA2026Q5HYC2 2103 aa15.51■□□□□ 0.07
CLN3-260ENST00000637578 A0A087X0M5 115 aa15.51■□□□□ 0.07
CLN3-260ENST00000637578 A0A1B0GX30 115 aa15.51■□□□□ 0.07
CLN3-260ENST00000637578 ZNF729A6NN14 1252 aaPredicted RBP15.51■□□□□ 0.07
CLN3-260ENST00000637578 OR7C1O76099 320 aaPredicted RBP15.51■□□□□ 0.07
CLN3-260ENST00000637578 GDNFP39905 211 aa15.51■□□□□ 0.07
CLN3-260ENST00000637578 RAB13P51153 203 aa15.51■□□□□ 0.07
CLN3-260ENST00000637578 PAN3Q58A45 887 aaKnown RBP15.51■□□□□ 0.07
CLN3-260ENST00000637578 CCBE1Q6UXH8 406 aaPredicted RBP15.51■□□□□ 0.07
CLN3-260ENST00000637578 CLVS1Q8IUQ0 354 aaPredicted RBP15.51■□□□□ 0.07
CLN3-260ENST00000637578 Q96M66 194 aa15.51■□□□□ 0.07
CLN3-260ENST00000637578 TMEM59Q9BXS4 323 aa15.51■□□□□ 0.07
CLN3-260ENST00000637578 LIN7BQ9HAP6 207 aa15.51■□□□□ 0.07
CLN3-260ENST00000637578 DAPK2Q9UIK4 370 aa15.51■□□□□ 0.07
CLN3-260ENST00000637578 A6NDX4 124 aa15.5■□□□□ 0.07
CLN3-260ENST00000637578 IGLV1-47P01700 117 aa15.5■□□□□ 0.07
CLN3-260ENST00000637578 RPS19P39019 145 aaKnown RBP15.5■□□□□ 0.07
CLN3-260ENST00000637578 KCNJ3P48549 501 aa15.5■□□□□ 0.07
CLN3-260ENST00000637578 SERPINB10P48595 397 aa15.5■□□□□ 0.07
CLN3-260ENST00000637578 FAM189A2Q15884 450 aa15.5■□□□□ 0.07
CLN3-260ENST00000637578 C2orf76Q3KRA6 126 aa15.5■□□□□ 0.07
CLN3-260ENST00000637578 TREML4Q6UXN2 200 aa15.5■□□□□ 0.07
CLN3-260ENST00000637578 OR2W3Q7Z3T1 314 aa15.5■□□□□ 0.07
CLN3-260ENST00000637578 LINC00596Q86U02 117 aa15.5■□□□□ 0.07
CLN3-260ENST00000637578 BARHL1Q9BZE3 327 aa15.5■□□□□ 0.07
CLN3-260ENST00000637578 KBTBD11-OT1A0A1B0GTJ5 212 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 FAM90A22PA8MWA6 464 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 HSPB6O14558 160 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 LDLRAD4O15165 306 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 IL1AP01583 271 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 HTR1DP28221 377 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 EFNB2P52799 333 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 RPS27AP62979 156 aaKnown RBP15.49■□□□□ 0.07
CLN3-260ENST00000637578 MPV17LQ2QL34 196 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 RSBN1Q5VWQ0 802 aaPredicted RBP15.49■□□□□ 0.07
CLN3-260ENST00000637578 KIF25Q9UIL4 384 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 TMEM272A0A1B0GTI8 110 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 RANBP1P43487 201 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 PLA2G7Q13093 441 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 PLA1AQ53H76 456 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 ZNF565Q8N9K5 539 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 OR4C13Q8NGP0 309 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 PLPPR1Q8TBJ4 325 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 ZNF596Q8TC21 504 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 NPFFR1Q9GZQ6 430 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 ABCB10Q9NRK6 738 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 ING3Q9NXR8 418 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 DPM3Q9P2X0 92 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 HILPDAQ9Y5L2 63 aa15.49■□□□□ 0.07
CLN3-260ENST00000637578 UTF1Q5T230 341 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 C11orf88Q6PI97 169 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 Q8N2B8 174 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 DTX3Q8N9I9 347 aa15.48■□□□□ 0.07
CLN3-260ENST00000637578 SUMF2Q8NBJ7 301 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms