RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 FAM118AQ9NWS6 357 aa12.71□□□□□ -0.37
CLN3-246ENST00000636228 A0A1W2PP11 408 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 ZNF736B4DX44 427 aaPredicted RBP12.7□□□□□ -0.38
CLN3-246ENST00000636228 GEMIN2O14893 280 aaKnown RBP12.7□□□□□ -0.38
CLN3-246ENST00000636228 LIMS3P0CW19 117 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 LIMS4P0CW20 117 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 ZNF816Q0VGE8 651 aaPredicted RBP12.7□□□□□ -0.38
CLN3-246ENST00000636228 EBI3Q14213 229 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 UNQ9370/PRO34162Q6UXP9 181 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 SLC16A12Q6ZSM3 486 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 FOXRED2Q8IWF2 684 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 OR10A7Q8NGE5 316 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 OR52N1Q8NH53 320 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 ARL11Q969Q4 196 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 SLC29A1Q99808 456 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 MCRIP2Q9BUT9 160 aaKnown RBP12.7□□□□□ -0.38
CLN3-246ENST00000636228 METTL9Q9H1A3 318 aa12.7□□□□□ -0.38
CLN3-246ENST00000636228 C15orf65H3BRN8 121 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 CCL24O00175 119 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 SDCBPO00560 298 aaPredicted RBP12.69□□□□□ -0.38
CLN3-246ENST00000636228 SLC31A2O15432 143 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 GZMHP20718 246 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 SERPINA2P20848 420 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 GPR12P47775 334 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 KCNJ3P48549 501 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 RBM11P57052 281 aaKnown RBP12.69□□□□□ -0.38
CLN3-246ENST00000636228 DGCR2P98153 550 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 PAX5Q02548 391 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 RAB40BQ12829 278 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 SMN1Q16637 294 aaKnown RBP12.69□□□□□ -0.38
CLN3-246ENST00000636228 ATAD3CQ5T2N8 411 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 Q8N6K4 173 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 Q8N9W7 124 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 APH1BQ8WW43 257 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 CPNE2Q96FN4 548 aaPredicted RBP12.69□□□□□ -0.38
CLN3-246ENST00000636228 Q96MT0 163 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 MYCBPQ99417 103 aaPredicted RBP12.69□□□□□ -0.38
CLN3-246ENST00000636228 DCLRE1BQ9H816 532 aa12.69□□□□□ -0.38
CLN3-246ENST00000636228 SIRT4Q9Y6E7 314 aaPredicted RBP12.69□□□□□ -0.38
CLN3-246ENST00000636228 TMEM30CPA0ZSE6 113 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 H0YHG0 523 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 CSTBP04080 98 aaKnown RBP12.68□□□□□ -0.38
CLN3-246ENST00000636228 ZNF93P35789 620 aaPredicted RBP12.68□□□□□ -0.38
CLN3-246ENST00000636228 ETV1P50549 477 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 LUMP51884 338 aaPredicted RBP12.68□□□□□ -0.38
CLN3-246ENST00000636228 MRPL28Q13084 256 aaKnown RBP12.68□□□□□ -0.38
CLN3-246ENST00000636228 PNLIPRP3Q17RR3 467 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 DDI2Q5TDH0 399 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 OR2G6Q5TZ20 316 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 TEX38Q6PEX7 206 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 TGIF2LXQ8IUE1 241 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 COMMD1Q8N668 190 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 OR13C5Q8NGS8 318 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 OR2T10Q8NGZ9 312 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 GPR148Q8TDV2 347 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 TMEM106AQ96A25 262 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 CYYR1Q96J86 154 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 WWC2-AS2Q96NR7 200 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 ABCG5Q9H222 651 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 PLSCR3Q9NRY6 295 aa12.68□□□□□ -0.38
CLN3-246ENST00000636228 RPL36Q9Y3U8 105 aaKnown RBP12.68□□□□□ -0.38
CLN3-246ENST00000636228 LOC100130705A0A1B0GUX0 176 aa12.67□□□□□ -0.38
CLN3-246ENST00000636228 AP4M1O00189 453 aa12.67□□□□□ -0.38
CLN3-246ENST00000636228 MPZL2O60487 215 aa12.67□□□□□ -0.38
CLN3-246ENST00000636228 MT-ND4P03905 459 aa12.67□□□□□ -0.38
CLN3-246ENST00000636228 CD2P06729 351 aa12.67□□□□□ -0.38
CLN3-246ENST00000636228 NEK7Q8TDX7 302 aa12.67□□□□□ -0.38
CLN3-246ENST00000636228 RTN4IP1Q8WWV3 396 aaPredicted RBP12.67□□□□□ -0.38
CLN3-246ENST00000636228 PRR25Q96S07 402 aa12.67□□□□□ -0.38
CLN3-246ENST00000636228 HSPB9Q9BQS6 159 aa12.67□□□□□ -0.38
CLN3-246ENST00000636228 TMEM138Q9NPI0 162 aa12.67□□□□□ -0.38
CLN3-246ENST00000636228 LIN7CQ9NUP9 197 aaKnown RBP12.67□□□□□ -0.38
CLN3-246ENST00000636228 MRPS18AQ9NVS2 196 aaKnown RBP12.67□□□□□ -0.38
CLN3-246ENST00000636228 GFOD1Q9NXC2 390 aa12.67□□□□□ -0.38
CLN3-246ENST00000636228 BDKRB2P30411 391 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 SLC6A1P30531 599 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 ZNF134P52741 427 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 F2RL1P55085 397 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 GPR50Q13585 617 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 SLC22A6Q4U2R8 563 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 KLHL22Q53GT1 634 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 NHLRC3Q5JS37 347 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 RPL22L1Q6P5R6 122 aaKnown RBP12.66□□□□□ -0.38
CLN3-246ENST00000636228 IZUMO1Q8IYV9 350 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 LINC00311Q8N616 119 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 TMEM104Q8NE00 496 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 OR10V1Q8NGI7 309 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 ST6GALNAC6Q969X2 333 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 S1PR3Q99500 378 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 S100A13Q99584 98 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 RASL11BQ9BPW5 248 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 IFT22Q9H7X7 185 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 IL36GQ9NZH8 169 aa12.66□□□□□ -0.38
CLN3-246ENST00000636228 MAGEA13PA6NCF6 341 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 MOSP00540 346 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 CD1BP29016 333 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 PPP3R1P63098 170 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 KIR2DS1Q14954 304 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 CXorf66Q5JRM2 361 aaPredicted RBP12.65□□□□□ -0.38
CLN3-246ENST00000636228 ZFP1Q6P2D0 407 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms