RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 TP53BP1Q12888 1972 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-209ENST00000635750 LOC107984156A0A0G2JMH3 177 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 MEX3AA1L020 520 aaKnown RBP4.9□□□□□ -1.62
SCN1A-209ENST00000635750 HOXA3O43365 443 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-209ENST00000635750 KCNAB3O43448 404 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 PRKNO60260 465 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-209ENST00000635750 ZNF205O95201 554 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 STAG3L3P0CL85 134 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 MAGEA5P43359 124 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 DLX6P56179 175 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 PNRC1Q12796 327 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-209ENST00000635750 IL24Q13007 206 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 DMRTC1Q5HYR2 192 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 FAAP20Q6NZ36 180 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 TEPPQ6URK8 271 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 ARL17AQ8IVW1 177 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 WFDC5Q8TCV5 224 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 ISG20L2Q9H9L3 353 aaKnown RBP4.9□□□□□ -1.62
SCN1A-209ENST00000635750 BOLA1Q9Y3E2 137 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 C4AP0C0L4 1744 aa4.9□□□□□ -1.62
SCN1A-209ENST00000635750 CASP8AP2Q9UKL3 1982 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 SYNGR1O43759 233 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 MC5RP33032 325 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 NMUP48645 174 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 DEGS2Q6QHC5 323 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 UBE2DNLQ8IWF7 75 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 ADAT3Q96EY9 351 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-209ENST00000635750 TSPAN32Q96QS1 320 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 Q9N2K0 584 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 MIOXQ9UGB7 285 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 C17orf51A8MQB3 221 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 LEUTXA8MZ59 168 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 SEC16AO15027 2179 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 MALP21145 153 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 GALNSP34059 522 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 FGF8P55075 233 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-209ENST00000635750 SUMO2P61956 95 aaKnown RBP4.9□□□□□ -1.63
SCN1A-209ENST00000635750 PSG9Q00887 426 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 FAM209AQ5JX71 171 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 PAPPA-AS1Q5QFB9 102 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 ZBTB34Q8NCN2 500 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 WDR89Q96FK6 387 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-209ENST00000635750 ABHD14BQ96IU4 210 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 ANGPTL4Q9BY76 406 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 RAB33BQ9H082 229 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 KDM3BQ7LBC6 1761 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 IGHV3OR15-7A0A075B7D8 119 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 A0A0A6YYD5 115 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 TMEM272A0A1B0GTI8 110 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 HMGA1P17096 107 aaKnown RBP4.9□□□□□ -1.63
SCN1A-209ENST00000635750 SLC35E3Q7Z769 313 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 OR2C3Q8N628 320 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 ZBTB44Q8NCP5 570 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 OR6X1Q8NH79 312 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 YIPF6Q96EC8 236 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 CDX2Q99626 313 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-209ENST00000635750 GPA33Q99795 319 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 SF3B5Q9BWJ5 86 aaKnown RBP4.9□□□□□ -1.63
SCN1A-209ENST00000635750 CDCA4Q9BXL8 241 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 LPAR5Q9H1C0 372 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 FSCN3Q9NQT6 498 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 CDC42EP3Q9UKI2 254 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 STARD10Q9Y365 291 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 NRAPQ86VF7 1730 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 IGHV5-51A0A0C4DH38 117 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 J3QR06 171 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 FAM157CP0CG43 387 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 TMEM88Q6PEY1 159 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 SLC23A3Q6PIS1 610 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 PCSK4Q6UW60 755 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 PRDM7Q9NQW5 492 aa4.9□□□□□ -1.63
SCN1A-209ENST00000635750 DNAJB12Q9NXW2 375 aaKnown RBP4.9□□□□□ -1.63
SCN1A-209ENST00000635750 CGB1A6NKQ9 187 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 PPM1DO15297 605 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 ZNF253O75346 499 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 HYPMO75409 117 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 PRDX2P32119 198 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 COMPP49747 757 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-209ENST00000635750 COL9A3Q14050 684 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-209ENST00000635750 C10orf128Q5T292 105 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 PRSS54Q6PEW0 395 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 PAXXQ9BUH6 204 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 RNF122Q9H9V4 155 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 GPR27Q9NS67 375 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 ZDHHC8Q9ULC8 765 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 C5P01031 1676 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 NACAE9PAV3 2078 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 hCG_38984A0A1B0GV85 526 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 EGR1P18146 543 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 FCARP24071 287 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 CKS2P33552 79 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 RPS27P42677 84 aaKnown RBP4.89□□□□□ -1.63
SCN1A-209ENST00000635750 EVX1P49640 407 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 CLDN20P56880 219 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 GUCA2AQ02747 115 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 Q6ZS52 159 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 OR2Y1Q8NGV0 311 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 SCNM1Q9BWG6 230 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 MMP25Q9NPA2 562 aa4.89□□□□□ -1.63
SCN1A-209ENST00000635750 PAPPA2Q9BXP8 1791 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms