RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 RFESDQ8TAC1 157 aa12.89□□□□□ -0.35
BRCA1-228ENST00000618469 LEAP2Q969E1 77 aa12.89□□□□□ -0.35
BRCA1-228ENST00000618469 GHRLQ9UBU3 117 aa12.89□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A10PA6NDY2 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A18PA6NE21 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A16PA6NEW6 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A20PA6NIJ5 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A7PA6NKC0 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A22PA8MWA6 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A12PA8MX19 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A5PA8MXJ8 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A23PA8MXZ1 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 MCRIP1C9JLW8 97 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 TSPAN9O75954 239 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 IGHV3-7P01780 117 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A15PP0C7V4 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A13PP0C7W8 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A14PP0C7W9 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FAM90A24PP0C7X0 464 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 HTR2CP28335 458 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 GNG10P50151 68 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 FABP5Q01469 135 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 C1orf100Q5SVJ3 147 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 OR10K2Q6IF99 312 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 ZNF497Q6ZNH5 498 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 TMEM219Q86XT9 240 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 SVOPQ8N4V2 548 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 OR6M1Q8NGM8 313 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 OR9G1Q8NH87 305 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 UBALD1Q8TB05 177 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 CCDC107Q8WV48 283 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 ETAA1Q9NY74 926 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 DPM3Q9P2X0 92 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 PEX16Q9Y5Y5 336 aa12.88□□□□□ -0.35
BRCA1-228ENST00000618469 LEUTXA8MZ59 168 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 NPIPB11E5RHQ5 1161 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 DENRO43583 198 aaKnown RBP12.87□□□□□ -0.35
BRCA1-228ENST00000618469 VSIG8P0DPA2 414 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 CALRP27797 417 aaKnown RBP12.87□□□□□ -0.35
BRCA1-228ENST00000618469 DYNLT3P51808 116 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 PROK1P58294 105 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 EMX1Q04741 257 aaPredicted RBP12.87□□□□□ -0.35
BRCA1-228ENST00000618469 SSX1Q16384 188 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 NKAPLQ5M9Q1 402 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 CYYR1Q96J86 154 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 GFI1Q99684 422 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 TMEM59Q9BXS4 323 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 NPFFR1Q9GZQ6 430 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 MMP28Q9H239 520 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 C16orf95Q9H693 158 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 LINC00574Q9H8X3 128 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 PLGRKTQ9HBL7 147 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 NDUFB11Q9NX14 153 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 PITPNC1Q9UKF7 332 aa12.87□□□□□ -0.35
BRCA1-228ENST00000618469 A6NDX4 124 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 BUB1B-PAK6H3BSN5 160 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 SLC22A1O15245 554 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 MRPS14O60783 128 aaKnown RBP12.86□□□□□ -0.35
BRCA1-228ENST00000618469 PDCD6O75340 191 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 FUT3P21217 361 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 CEACAM3P40198 252 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 ARHGDIBP52566 201 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 PRRX1P54821 245 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 UNC119Q13432 240 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 P2RY14Q15391 338 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 TPTE2P1Q5T6R2 138 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 SIGIRRQ6IA17 410 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 CCBE1Q6UXH8 406 aaPredicted RBP12.86□□□□□ -0.35
BRCA1-228ENST00000618469 OR4K15Q8NH41 348 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 ARL11Q969Q4 196 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 CREB3L1Q96BA8 519 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 RANBP3Q9H6Z4 567 aaPredicted RBP12.86□□□□□ -0.35
BRCA1-228ENST00000618469 TRAPPC2LQ9UL33 140 aa12.86□□□□□ -0.35
BRCA1-228ENST00000618469 AK6Q9Y3D8 172 aaKnown RBP12.86□□□□□ -0.35
BRCA1-228ENST00000618469 AMMECR1Q9Y4X0 333 aaPredicted RBP12.86□□□□□ -0.35
BRCA1-228ENST00000618469 UBE2QL1A1L167 161 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 C15orf65H3BRN8 121 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 J3QR06 171 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 BPNT1O95861 308 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 MT-ND4P03905 459 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 PSMB9P28065 219 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 RPS27AP62979 156 aaKnown RBP12.85□□□□□ -0.35
BRCA1-228ENST00000618469 RAB11BQ15907 218 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 SYT6Q5T7P8 510 aaPredicted RBP12.85□□□□□ -0.35
BRCA1-228ENST00000618469 OR10A7Q8NGE5 316 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 KCNG3Q8TAE7 436 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 TOMM40LQ969M1 308 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 RPEQ96AT9 228 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 NICN1Q9BSH3 213 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 PSG11Q9UQ72 335 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 SIGLEC9Q9Y336 463 aa12.85□□□□□ -0.35
BRCA1-228ENST00000618469 IGHV3-43A0A0B4J1X8 118 aa12.84□□□□□ -0.35
BRCA1-228ENST00000618469 A0A1W2PPE3 182 aa12.84□□□□□ -0.35
BRCA1-228ENST00000618469 C12orf77C9JDV5 145 aa12.84□□□□□ -0.35
BRCA1-228ENST00000618469 H3BUI4 141 aa12.84□□□□□ -0.35
BRCA1-228ENST00000618469 SDCBPO00560 298 aaPredicted RBP12.84□□□□□ -0.35
BRCA1-228ENST00000618469 SLC17A2O00624 439 aa12.84□□□□□ -0.35
BRCA1-228ENST00000618469 IGHV3-43DP0DP04 118 aa12.84□□□□□ -0.35
BRCA1-228ENST00000618469 GZMHP20718 246 aa12.84□□□□□ -0.35
BRCA1-228ENST00000618469 CD24P25063 80 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms