RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 KCTD7Q96MP8 289 aa15.2■□□□□ 0.02
CDX1-202ENST00000616154 NCOR1P1Q9H4R4 102 aa15.2■□□□□ 0.02
CDX1-202ENST00000616154 TAS2R3Q9NYW6 316 aa15.2■□□□□ 0.02
CDX1-202ENST00000616154 HILPDAQ9Y5L2 63 aa15.2■□□□□ 0.02
CDX1-202ENST00000616154 IGHV2-26A0A0B4J1V2 119 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 LOC100506127A0A0U1RQW1 187 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 A0A1W2PPK0 400 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 FAM90A22PA8MWA6 464 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 MAGEB3O15480 346 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 CALRP27797 417 aaKnown RBP15.19■□□□□ 0.02
CDX1-202ENST00000616154 VDAC2P45880 294 aaPredicted RBP15.19■□□□□ 0.02
CDX1-202ENST00000616154 SNU13P55769 128 aaKnown RBP15.19■□□□□ 0.02
CDX1-202ENST00000616154 ARSJQ5FYB0 599 aaPredicted RBP15.19■□□□□ 0.02
CDX1-202ENST00000616154 FOXB2Q5VYV0 432 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 MRAPQ8TCY5 172 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 COQ2Q96H96 371 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 CLEC7AQ9BXN2 247 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 TMEM133Q9H2Q1 129 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 RNF167Q9H6Y7 350 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 KIAA2026Q5HYC2 2103 aa15.19■□□□□ 0.02
CDX1-202ENST00000616154 ZNF44P15621 663 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 PTGFRP43088 359 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 NCS1P62166 190 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 PPP3R1P63098 170 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 HEPN1Q6WQI6 88 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 NDNFQ8TB73 568 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 TNFAIP8L1Q8WVP5 186 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 PHF21AQ96BD5 680 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 OCSTAMPQ9BR26 566 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 IFT22Q9H7X7 185 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 CKLFQ9UBR5 152 aa15.18■□□□□ 0.02
CDX1-202ENST00000616154 TRGV10A0A0A0MS01 117 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 ODAMA1E959 279 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 H3BMQ9 156 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 SLC22A1O15245 554 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 CD34P28906 385 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 BDKRB2P30411 391 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 GLIPR1P48060 266 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 LOXL3P58215 753 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 TMEM95Q3KNT9 176 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 TPRA1Q86W33 373 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 CDH26Q8IXH8 852 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 GAL3ST2Q9H3Q3 398 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 AURKAIP1Q9NWT8 199 aaPredicted RBP15.17■□□□□ 0.02
CDX1-202ENST00000616154 TRAV24A0A0B4J272 114 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 H3BUI4 141 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 DEGS1O15121 323 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 MMP23AO75900 390 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 CGB3P0DN86 165 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 CGB7P0DN87 165 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 HTR1DP28221 377 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 ZNF93P35789 620 aaPredicted RBP15.17■□□□□ 0.02
CDX1-202ENST00000616154 TGFBR1P36897 503 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 OR3A4PP47883 348 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 KCNJ3P48549 501 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 VBP1P61758 197 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 LSM3P62310 102 aaKnown RBP15.17■□□□□ 0.02
CDX1-202ENST00000616154 CD83Q01151 205 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 AESQ08117 197 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 DDI2Q5TDH0 399 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 C16orf82Q7Z2V1 217 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 NKAIN3Q8N8D7 197 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 OR4P4Q8NGL7 312 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 DGCR14Q96DF8 476 aaKnown RBP15.17■□□□□ 0.02
CDX1-202ENST00000616154 GPER1Q99527 375 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 GFI1Q99684 422 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 FAM192AQ9GZU8 254 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 LINC00574Q9H8X3 128 aa15.17■□□□□ 0.02
CDX1-202ENST00000616154 RSL24D1Q9UHA3 163 aaKnown RBP15.17■□□□□ 0.02
CDX1-202ENST00000616154 A0A087X0M5 115 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 A0A1B0GX30 115 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 IL1AP01583 271 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 MYL9P24844 172 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 SDC2P34741 201 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 OR52W1Q6IF63 320 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 RTN4RL2Q86UN3 420 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 NR2C2APQ86WQ0 139 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 WFDC9Q8NEX5 89 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 OR5AU1Q8NGC0 362 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 OR6C3Q9NZP0 311 aa15.16■□□□□ 0.02
CDX1-202ENST00000616154 ZNF780AO75290 641 aaPredicted RBP15.15■□□□□ 0.02
CDX1-202ENST00000616154 IGLV1-47P01700 117 aa15.15■□□□□ 0.02
CDX1-202ENST00000616154 SPCS2Q15005 226 aa15.15■□□□□ 0.02
CDX1-202ENST00000616154 RSU1Q15404 277 aa15.15■□□□□ 0.02
CDX1-202ENST00000616154 KRBOX4Q5JUW0 171 aa15.15■□□□□ 0.02
CDX1-202ENST00000616154 TRAPPC6BQ86SZ2 158 aa15.15■□□□□ 0.02
CDX1-202ENST00000616154 LINC00596Q86U02 117 aa15.15■□□□□ 0.02
CDX1-202ENST00000616154 METTL9Q9H1A3 318 aa15.15■□□□□ 0.02
CDX1-202ENST00000616154 LIN7BQ9HAP6 207 aa15.15■□□□□ 0.02
CDX1-202ENST00000616154 ZNF729A6NN14 1252 aaPredicted RBP15.14■□□□□ 0.01
CDX1-202ENST00000616154 NOL3O60936 208 aaKnown RBP15.14■□□□□ 0.01
CDX1-202ENST00000616154 CDK2P24941 298 aa15.14■□□□□ 0.01
CDX1-202ENST00000616154 RBM11P57052 281 aaKnown RBP15.14■□□□□ 0.01
CDX1-202ENST00000616154 SCN1BQ07699 218 aa15.14■□□□□ 0.01
CDX1-202ENST00000616154 ATXN7L3Q14CW9 347 aaPredicted RBP15.14■□□□□ 0.01
CDX1-202ENST00000616154 C17orf58Q2M2W7 97 aa15.14■□□□□ 0.01
CDX1-202ENST00000616154 PIGYQ3MUY2 71 aa15.14■□□□□ 0.01
CDX1-202ENST00000616154 C1orf100Q5SVJ3 147 aa15.14■□□□□ 0.01
CDX1-202ENST00000616154 RSBN1Q5VWQ0 802 aaPredicted RBP15.14■□□□□ 0.01
CDX1-202ENST00000616154 OR10K1Q8NGX5 313 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms