RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 FIP1L1Q6UN15 594 aaKnown RBP10.88□□□□□ -0.67
LIG1-221ENST00000613670 THOC3Q96J01 351 aaKnown RBP10.88□□□□□ -0.67
LIG1-221ENST00000613670 ARV1Q9H2C2 271 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 LIME1Q9H400 295 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 LYRM2Q9NU23 88 aaPredicted RBP10.88□□□□□ -0.67
LIG1-221ENST00000613670 TREM2Q9NZC2 230 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 PLA2G2EQ9NZK7 142 aa10.88□□□□□ -0.67
LIG1-221ENST00000613670 GPR179Q6PRD1 2367 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 PIGBOS1A0A0B4J2F0 54 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 RRP8O43159 456 aaKnown RBP10.87□□□□□ -0.67
LIG1-221ENST00000613670 SUCLG1P53597 346 aaKnown RBP10.87□□□□□ -0.67
LIG1-221ENST00000613670 PMS2P11Q13670 270 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 HIKESHIQ53FT3 197 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 KHDC3LQ587J8 217 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 WDR74Q6RFH5 385 aaPredicted RBP10.87□□□□□ -0.67
LIG1-221ENST00000613670 ZNF574Q6ZN55 896 aaPredicted RBP10.87□□□□□ -0.67
LIG1-221ENST00000613670 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.87□□□□□ -0.67
LIG1-221ENST00000613670 SELENOHQ8IZQ5 122 aaKnown RBP10.87□□□□□ -0.67
LIG1-221ENST00000613670 NFAM1Q8NET5 270 aaPredicted RBP10.87□□□□□ -0.67
LIG1-221ENST00000613670 CADM4Q8NFZ8 388 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 HLA-CQ95604 372 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 RAB40CQ96S21 281 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 PNRC2Q9NPJ4 139 aaKnown RBP10.87□□□□□ -0.67
LIG1-221ENST00000613670 RPRMQ9NS64 109 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 ZDHHC8Q9ULC8 765 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 LYL1P12980 280 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 FGF7P21781 194 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 HOXC12P31275 282 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 GALR1P47211 349 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 PYY3Q5JQD4 70 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 MYPOPQ86VE0 399 aaPredicted RBP10.87□□□□□ -0.67
LIG1-221ENST00000613670 IFI44Q8TCB0 444 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 MSI2Q96DH6 328 aaKnown RBP10.87□□□□□ -0.67
LIG1-221ENST00000613670 WFIKKN1Q96NZ8 548 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 OBP2BQ9NPH6 170 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 V9GYS6 101 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 ROS1P08922 2347 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 ZNF320A2RRD8 509 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 K7N7A8 449 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 CA6P23280 308 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 SLC38A11Q08AI6 406 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 BSXQ3C1V8 233 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 HEPN1Q6WQI6 88 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 SMRP1Q8NCR6 262 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 OR10A7Q8NGE5 316 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 SRXN1Q9BYN0 137 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 CDH20Q9HBT6 801 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 IL36RNQ9UBH0 155 aa10.87□□□□□ -0.67
LIG1-221ENST00000613670 IGKV1-12A0A0C4DH73 117 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 IGHV5-10-1A0A0J9YXX1 117 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 RPL36A-HNRNPH2H7BZ11 118 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 IGKV1D-12P01611 117 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 HSPB1P04792 205 aaKnown RBP10.86□□□□□ -0.67
LIG1-221ENST00000613670 PDLIM3Q53GG5 364 aaPredicted RBP10.86□□□□□ -0.67
LIG1-221ENST00000613670 SIRT7Q9NRC8 400 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 PRSS50Q9UI38 385 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 BCL2P10415 239 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 CCL1P22362 96 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 GABRA2P47869 451 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 ZNF385CQ66K41 422 aaPredicted RBP10.86□□□□□ -0.67
LIG1-221ENST00000613670 CARFQ8N187 725 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 SAMD10Q9BYL1 202 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 RNF122Q9H9V4 155 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 Q9N2K0 584 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 DENND4AQ7Z401 1863 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 PCDH15Q96QU1 1955 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 ZNF729A6NN14 1252 aaPredicted RBP10.86□□□□□ -0.67
LIG1-221ENST00000613670 CST2P09228 141 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 UBE2NP61088 152 aaKnown RBP10.86□□□□□ -0.67
LIG1-221ENST00000613670 LYPD6Q86Y78 171 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 DMBX1Q8NFW5 382 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 APH1AQ96BI3 265 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 MUCL1Q96DR8 90 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 TAAR9Q96RI9 348 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 BOKQ9UMX3 212 aaPredicted RBP10.86□□□□□ -0.67
LIG1-221ENST00000613670 FUT9Q9Y231 359 aa10.86□□□□□ -0.67
LIG1-221ENST00000613670 IGKV1-27A0A075B6S5 117 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 CEACAM18A8MTB9 384 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 C3orf80F5H4A9 247 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST1H2BKO60814 126 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 CA11O75493 328 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 OPN1MWP04001 364 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST1H2BJP06899 126 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 OPN1MW2P0DN77 364 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 OPN1MW3P0DN78 364 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST1H2BOP23527 126 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST1H2BBP33778 126 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST1H2BDP58876 126 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 ERVFRD-1P60508 538 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST1H2BCP62807 126 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST2H2BEQ16778 126 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.85□□□□□ -0.67
LIG1-221ENST00000613670 OR10P1Q8NGE3 313 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST1H2BHQ93079 126 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 GPR146Q96CH1 333 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST1H2BNQ99877 126 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 HIST1H2BMQ99879 126 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 SMDT1Q9H4I9 107 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 GCM1Q9NP62 436 aa10.85□□□□□ -0.67
LIG1-221ENST00000613670 CACNA1GO43497 2377 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms