RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 ZNF665Q9H7R5 613 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 STRAPQ9Y3F4 350 aaKnown RBP12.03□□□□□ -0.48
COL6A1-207ENST00000612273 LOC102723996A0A087X1L8 192 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 AP4M1O00189 453 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 SIRPB1O00241 398 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 CA6P23280 308 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 ERVFRD-1P60508 538 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 RAB1AP62820 205 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 WDR5BQ86VZ2 330 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 OR5T1Q8NG75 326 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 ARV1Q9H2C2 271 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 WDR54Q9H977 334 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 MED12LQ86YW9 2145 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 RPL36A-HNRNPH2H7BZ11 118 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 UBE2CO00762 179 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 SLC34A2O95436 690 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 MMP9P14780 707 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 BMP5P22003 454 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 TMEM211Q6ICI0 200 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 NECAP1Q8NC96 275 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 Q8WTZ3 238 aa12.03□□□□□ -0.48
COL6A1-207ENST00000612273 TUBG1P23258 451 aa12.02□□□□□ -0.48
COL6A1-207ENST00000612273 PCBD1P61457 104 aa12.02□□□□□ -0.48
COL6A1-207ENST00000612273 HIKESHIQ53FT3 197 aa12.02□□□□□ -0.48
COL6A1-207ENST00000612273 TMEM42Q69YG0 159 aa12.02□□□□□ -0.48
COL6A1-207ENST00000612273 OR8G2PQ6IF36 304 aa12.02□□□□□ -0.48
COL6A1-207ENST00000612273 Q6ZRM9 215 aa12.02□□□□□ -0.48
COL6A1-207ENST00000612273 PLPPR2Q96GM1 343 aa12.02□□□□□ -0.48
COL6A1-207ENST00000612273 TMPRSS5Q9H3S3 457 aa12.02□□□□□ -0.48
COL6A1-207ENST00000612273 Q9N2K0 584 aa12.02□□□□□ -0.48
COL6A1-207ENST00000612273 CACNG5Q9UF02 275 aa12.02□□□□□ -0.48
COL6A1-207ENST00000612273 IFNA17P01571 189 aa12.02□□□□□ -0.49
COL6A1-207ENST00000612273 TRGC2P03986 189 aa12.02□□□□□ -0.49
COL6A1-207ENST00000612273 TFF1P04155 84 aa12.02□□□□□ -0.49
COL6A1-207ENST00000612273 MAGEA5P43359 124 aa12.02□□□□□ -0.49
COL6A1-207ENST00000612273 SPANXN5Q5MJ07 72 aa12.02□□□□□ -0.49
COL6A1-207ENST00000612273 SPNS3Q6ZMD2 512 aa12.02□□□□□ -0.49
COL6A1-207ENST00000612273 HLA-CQ95604 372 aa12.02□□□□□ -0.49
COL6A1-207ENST00000612273 ZNF251Q9BRH9 671 aa12.02□□□□□ -0.49
COL6A1-207ENST00000612273 SF3B5Q9BWJ5 86 aaKnown RBP12.02□□□□□ -0.49
COL6A1-207ENST00000612273 SLC25A31Q9H0C2 315 aa12.02□□□□□ -0.49
COL6A1-207ENST00000612273 LYRM2Q9NU23 88 aaPredicted RBP12.02□□□□□ -0.49
COL6A1-207ENST00000612273 TCFL5Q9UL49 500 aa12.02□□□□□ -0.49
COL6A1-207ENST00000612273 TUSC2O75896 110 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 DEFA4P12838 97 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 SPINK9Q5DT21 86 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 ZNF880Q6PDB4 577 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 BEND4Q6ZU67 534 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 TIPARPQ7Z3E1 657 aaKnown RBP12.01□□□□□ -0.49
COL6A1-207ENST00000612273 PPP1R32Q7Z5V6 425 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 CXorf67Q86X51 503 aaPredicted RBP12.01□□□□□ -0.49
COL6A1-207ENST00000612273 ZDHHC23Q8IYP9 409 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 M1APQ8TC57 530 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 SIGLEC12Q96PQ1 595 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 SPIN2AQ99865 258 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 SPIN2BQ9BPZ2 258 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 NIPSNAP3BQ9BS92 247 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 PLK3Q9H4B4 646 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 NCKAP5O14513 1909 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 TNRC18O15417 2968 aaPredicted RBP12.01□□□□□ -0.49
COL6A1-207ENST00000612273 PGLYRP1O75594 196 aaPredicted RBP12.01□□□□□ -0.49
COL6A1-207ENST00000612273 S100A8P05109 93 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 EIF2S3P41091 472 aaKnown RBP12.01□□□□□ -0.49
COL6A1-207ENST00000612273 OR8B8Q15620 311 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 ODF3L1Q8IXM7 274 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 LRTM2Q8N967 370 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 GPR146Q96CH1 333 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 EGLN1Q9GZT9 426 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 DOK5Q9P104 306 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 OR14J1Q9UGF5 321 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 LAMA5O15230 3695 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 CDS2O95674 445 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 MMP7P09237 267 aaPredicted RBP12.01□□□□□ -0.49
COL6A1-207ENST00000612273 VDAC1P21796 283 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 RAB5CP51148 216 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 RHEBQ15382 184 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 OR10D4PQ8NGN7 298 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 OR10J5Q8NHC4 309 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 PILRBQ9UKJ0 227 aa12.01□□□□□ -0.49
COL6A1-207ENST00000612273 TTC28Q96AY4 2481 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 SRP19P09132 144 aaKnown RBP12□□□□□ -0.49
COL6A1-207ENST00000612273 SMIM6P0DI80 62 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 FOLR2P14207 255 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 CEBPDP49716 269 aaPredicted RBP12□□□□□ -0.49
COL6A1-207ENST00000612273 RAB2AP61019 212 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 TESK1Q15569 626 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 STX12Q86Y82 276 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 GPR61Q9BZJ8 451 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 RPRMQ9NS64 109 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 SCAF4O95104 1147 aaKnown RBP12□□□□□ -0.49
COL6A1-207ENST00000612273 IFNA5P01569 189 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 ICAM4Q14773 271 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 RNF212Q495C1 297 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 EDARADDQ8WWZ3 215 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 TAAR3PQ9P1P4 343 aa12□□□□□ -0.49
COL6A1-207ENST00000612273 TPRP12270 2363 aaKnown RBP12□□□□□ -0.49
COL6A1-207ENST00000612273 CD300LBA8K4G0 201 aa11.99□□□□□ -0.49
COL6A1-207ENST00000612273 RBMXL2O75526 392 aaKnown RBP11.99□□□□□ -0.49
COL6A1-207ENST00000612273 PLGLB1Q02325 96 aa11.99□□□□□ -0.49
COL6A1-207ENST00000612273 PMS2CLQ68D20 193 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms