RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 GDPD3Q7L5L3 318 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 CMTM4Q8IZR5 234 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 C11orf42Q8N5U0 333 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 TEX29Q8N6K0 151 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 SUMF2Q8NBJ7 301 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 CHST4Q8NCG5 386 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 C8orf46Q8TAG6 207 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 PLPPR1Q8TBJ4 325 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 ENKURQ8TC29 256 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 COQ2Q96H96 371 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 JMJD8Q96S16 334 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 S100A13Q99584 98 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 SDHCQ99643 169 aaPredicted RBP7.18□□□□□ -1.26
TRIM28-214ENST00000600840 C7orf50Q9BRJ6 194 aaKnown RBP7.18□□□□□ -1.26
TRIM28-214ENST00000600840 TMEM59Q9BXS4 323 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 NCOR1P1Q9H4R4 102 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.18□□□□□ -1.26
TRIM28-214ENST00000600840 COPZ2Q9P299 210 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 OR14J1Q9UGF5 321 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 HSF4Q9ULV5 492 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 ETV7Q9Y603 341 aa7.18□□□□□ -1.26
TRIM28-214ENST00000600840 TRAV40A0A0B4J280 105 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 A0A1W2PQ09 198 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 CENPXA8MT69 81 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 BOLA2-SMG1P6H3BVE0 249 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 SIRPB1O00241 398 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 GPR37O15354 613 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 PDCD6O75340 191 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 EIF4EP06730 217 aaKnown RBP7.17□□□□□ -1.26
TRIM28-214ENST00000600840 MELTFP08582 738 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 FUT3P21217 361 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 ERP29P30040 261 aaKnown RBP7.17□□□□□ -1.26
TRIM28-214ENST00000600840 GABRA2P47869 451 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 PITPNBP48739 271 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 NPY4RP50391 375 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 GNB2P62879 340 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 FOXL1Q12952 345 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 BAMBIQ13145 260 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 SLC9A3R2Q15599 337 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 ZNF260Q3ZCT1 412 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 RSBN1Q5VWQ0 802 aaPredicted RBP7.17□□□□□ -1.26
TRIM28-214ENST00000600840 RUSC1-AS1Q66K80 236 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 OLFML2AQ68BL7 652 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 PYHIN1Q6K0P9 492 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 BRD3OSQ6XYD6 125 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 TCF23Q7RTU1 214 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 SLC36A1Q7Z2H8 476 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 DUSP18Q8NEJ0 188 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 DEDD2Q8WXF8 326 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 RAB40AQ8WXH6 277 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 ST8SIA4Q92187 359 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 DYRK2Q92630 601 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 CORO2AQ92828 525 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 UPRTQ96BW1 309 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 SULT4A1Q9BR01 284 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 NUDT16L1Q9BRJ7 211 aaKnown RBP7.17□□□□□ -1.26
TRIM28-214ENST00000600840 DCTN5Q9BTE1 182 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 MS4A7Q9GZW8 240 aaPredicted RBP7.17□□□□□ -1.26
TRIM28-214ENST00000600840 UNKLQ9H9P5 680 aaKnown RBP7.17□□□□□ -1.26
TRIM28-214ENST00000600840 TBC1D24Q9ULP9 559 aa7.17□□□□□ -1.26
TRIM28-214ENST00000600840 KIR2DS1A0A191URI9 304 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 HMX3A6NHT5 357 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 FAM25AB3EWG3 89 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 FAM25CB3EWG5 89 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 FAM25GB3EWG6 89 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 MFNGO00587 321 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 MGST3O14880 152 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 HPGDSO60760 199 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 OR7C1O76099 320 aaPredicted RBP7.16□□□□□ -1.26
TRIM28-214ENST00000600840 NAPSAO96009 420 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 MT-ND4P03905 459 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 ZNF44P15621 663 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 ELK1P19419 428 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 OMGP23515 440 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 GABRR1P24046 479 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 HLA-DMAP28067 261 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 BLVRBP30043 206 aaPredicted RBP7.16□□□□□ -1.26
TRIM28-214ENST00000600840 GLIPR1P48060 266 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 VEGFCP49767 419 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 DLX6P56179 175 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 MRPS10P82664 201 aaKnown RBP7.16□□□□□ -1.26
TRIM28-214ENST00000600840 SRSF4Q08170 494 aaKnown RBP7.16□□□□□ -1.26
TRIM28-214ENST00000600840 IKZF1Q13422 519 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 IL18Q14116 193 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 DEFB112Q30KQ8 113 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 TMEM200BQ69YZ2 307 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 RAB12Q6IQ22 244 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 ZNF880Q6PDB4 577 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 CNIH2Q6PI25 160 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 PLET1Q6UQ28 207 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 BTN2A1Q7KYR7 527 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 C6orf201Q7Z4U5 140 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 C1QL4Q86Z23 238 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 Q8N402 240 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 OR8B3Q8NGG8 313 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 OR56B1Q8NGI3 324 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 OR5D13Q8NGL4 314 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 OR10R2Q8NGX6 335 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 ARHGAP5-AS1Q96IT6 56 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 DMRTB1Q96MA1 342 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms