RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SELENOIQ9C0D9 397 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 BANF2Q9H503 90 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 ZNF702PQ9H963 129 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 PLGRKTQ9HBL7 147 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 SPACA1Q9HBV2 294 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 SERTAD4Q9NUC0 356 aa10.07□□□□□ -0.8
UPF1-203ENST00000594504 UBE2J1Q9Y385 318 aaPredicted RBP10.07□□□□□ -0.8
UPF1-203ENST00000594504 AK6Q9Y3D8 172 aaKnown RBP10.07□□□□□ -0.8
UPF1-203ENST00000594504 ODAMA1E959 279 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 H3BUI4 141 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 BPNT1O95861 308 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 VSIG8P0DPA2 414 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 RAB11BQ15907 218 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 AANATQ16613 207 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 ATAD3CQ5T2N8 411 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 C22orf42Q6IC83 251 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 KCNG3Q8TAE7 436 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 CORO2AQ92828 525 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 FAM46BQ96A09 425 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 NPFFR1Q9GZQ6 430 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 MMP28Q9H239 520 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 GAL3ST2Q9H3Q3 398 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 NCOR1P1Q9H4R4 102 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 RANBP3Q9H6Z4 567 aaPredicted RBP10.06□□□□□ -0.8
UPF1-203ENST00000594504 TXNL4BQ9NX01 149 aaKnown RBP10.06□□□□□ -0.8
UPF1-203ENST00000594504 TAS2R3Q9NYW6 316 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 OR6C3Q9NZP0 311 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 ZNF581Q9P0T4 197 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 RCC2Q9P258 522 aaKnown RBP10.06□□□□□ -0.8
UPF1-203ENST00000594504 SSR3Q9UNL2 185 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 V9GY05 133 aa10.06□□□□□ -0.8
UPF1-203ENST00000594504 A6NDX4 124 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 TRIM64CA6NLI5 447 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 MPIG6BO95866 241 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 IGHV1-8P0DP01 117 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 ARSBP15848 533 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 CD36P16671 472 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 QRFPP83859 136 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 SSX2Q16385 188 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 FBLN7Q53RD9 439 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 KPRPQ5T749 579 aaPredicted RBP10.05□□□□□ -0.8
UPF1-203ENST00000594504 RSBN1Q5VWQ0 802 aaPredicted RBP10.05□□□□□ -0.8
UPF1-203ENST00000594504 Q6ZPA2 131 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 PLPPR1Q8TBJ4 325 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 TMEM59Q9BXS4 323 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 RAB18Q9NP72 206 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 ING3Q9NXR8 418 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 KIF25Q9UIL4 384 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 TCF19Q9Y242 345 aa10.05□□□□□ -0.8
UPF1-203ENST00000594504 PRKDCP78527 4128 aaKnown RBP10.05□□□□□ -0.8
UPF1-203ENST00000594504 MEIKINA0A087WXM9 373 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 SHISA3A0PJX4 238 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 TMEM14DPA8MWL7 114 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 ODF3BA8MYP8 253 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 MCRIP1C9JLW8 97 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 FBXO24O75426 580 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 GLAP06280 429 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 RAB3BP20337 219 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 FUT3P21217 361 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 BLCAPP62952 87 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 RPS27AP62979 156 aaKnown RBP10.04□□□□□ -0.8
UPF1-203ENST00000594504 DYNC1I2Q13409 638 aaKnown RBP10.04□□□□□ -0.8
UPF1-203ENST00000594504 RBM39Q14498 530 aaKnown RBP10.04□□□□□ -0.8
UPF1-203ENST00000594504 P2RY14Q15391 338 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 OR10K2Q6IF99 312 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 RAB12Q6IQ22 244 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 C11orf88Q6PI97 169 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 OR2W3Q7Z3T1 314 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 ZNF565Q8N9K5 539 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 OR13D1Q8NGV5 346 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 NEK7Q8TDX7 302 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 CITED2Q99967 270 aaPredicted RBP10.04□□□□□ -0.8
UPF1-203ENST00000594504 OR51E2Q9H255 320 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 STEAP1Q9UHE8 339 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 HILPDAQ9Y5L2 63 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 PEX16Q9Y5Y5 336 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 SESN1Q9Y6P5 492 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 VWFP04275 2813 aa10.04□□□□□ -0.8
UPF1-203ENST00000594504 TMEM30CPA0ZSE6 113 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 ZNF729A6NN14 1252 aaPredicted RBP10.03□□□□□ -0.8
UPF1-203ENST00000594504 IFITM5A6NNB3 132 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 ADARB2-AS1A8MUL3 147 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 VGLL3A8MV65 326 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 PDCD6O75340 191 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 GADD45AP24522 165 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 GLP1RP43220 463 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 OR10A3P58181 314 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 UNC119Q13432 240 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 TMEM95Q3KNT9 176 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 TIMM50Q3ZCQ8 353 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 ZNF626Q68DY1 528 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 SIGIRRQ6IA17 410 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 HEPN1Q6WQI6 88 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 LIAT1Q6ZQX7 453 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 TPRA1Q86W33 373 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 OR51D1Q8NGF3 324 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 OR13A1Q8NGR1 328 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 FAM3DQ96BQ1 224 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 R3HDM4Q96D70 268 aa10.03□□□□□ -0.8
UPF1-203ENST00000594504 MALSU1Q96EH3 234 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms