RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 LAIR2Q6ISS4 152 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 GLIPR1L1Q6UWM5 242 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 ZNF497Q6ZNH5 498 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 GAPTQ8N292 157 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 LINC00311Q8N616 119 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 KCNG3Q8TAE7 436 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 RPEQ96AT9 228 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 KIRREL1Q96J84 757 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 RBM14Q96PK6 669 aaKnown RBP8.44□□□□□ -1.06
LIG3-212ENST00000590181 OR14A2Q96R54 314 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 GHITMQ9H3K2 345 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 RCC2Q9P258 522 aaKnown RBP8.44□□□□□ -1.06
LIG3-212ENST00000590181 PLXNB1O43157 2135 aa8.44□□□□□ -1.06
LIG3-212ENST00000590181 GEMIN2O14893 280 aaKnown RBP8.43□□□□□ -1.06
LIG3-212ENST00000590181 RGS10O43665 173 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 GAPDHP04406 335 aaKnown RBP8.43□□□□□ -1.06
LIG3-212ENST00000590181 CSF1P09603 554 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 CALCBP10092 127 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 SRMP19623 302 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 NFYBP25208 207 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 IL3RAP26951 378 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 PRB3Q04118 309 aaPredicted RBP8.43□□□□□ -1.06
LIG3-212ENST00000590181 TPBGQ13641 420 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 IRF3Q14653 427 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 PIGYQ3MUY2 71 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 RBM48Q5RL73 367 aaKnown RBP8.43□□□□□ -1.06
LIG3-212ENST00000590181 LY6G6FQ5SQ64 297 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 ATAD3CQ5T2N8 411 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 PRAMEF5Q5TYX0 476 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 PRSS48Q7RTY5 328 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 LYPD6Q86Y78 171 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 UFD1Q92890 307 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 OCSTAMPQ9BR26 566 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 CENPOQ9BU64 300 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 RIMS4Q9H426 269 aaPredicted RBP8.43□□□□□ -1.06
LIG3-212ENST00000590181 ACOT13Q9NPJ3 140 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 KCNIP1Q9NZI2 227 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 MGAT4AQ9UM21 535 aa8.43□□□□□ -1.06
LIG3-212ENST00000590181 TRAV8-7A0A075B6U6 113 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 FAM90A9PA6NNJ1 464 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 AIPO00170 330 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 FGF16O43320 207 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 RGS11O94810 467 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 MT-ND4P03905 459 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 OPN1MWP04001 364 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 MAS1P04201 325 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 UCHL1P09936 223 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 OPN1MW2P0DN77 364 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 OPN1MW3P0DN78 364 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 MGMTP16455 207 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 GALP22466 123 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 SLC6A1P30531 599 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 ZNF816Q0VGE8 651 aaPredicted RBP8.42□□□□□ -1.06
LIG3-212ENST00000590181 MLLT11Q13015 90 aaPredicted RBP8.42□□□□□ -1.06
LIG3-212ENST00000590181 MED22Q15528 200 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 BEAN1Q3B7T3 259 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 HSD17B12Q53GQ0 312 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 C1orf100Q5SVJ3 147 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 RNF144BQ7Z419 303 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 NDUFA11Q86Y39 141 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 DYNAPQ8N1N2 210 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 OR4F17Q8NGA8 305 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 OR8H1Q8NGG4 311 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 OR13A1Q8NGR1 328 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 OR10K1Q8NGX5 313 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 OR10X1Q8NGY0 326 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 NEK7Q8TDX7 302 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 TOMM40LQ969M1 308 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 ARL11Q969Q4 196 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 MUL1Q969V5 352 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 OR4F4Q96R69 305 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 GON7Q9BXV9 100 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 YTHDF1Q9BYJ9 559 aaKnown RBP8.42□□□□□ -1.06
LIG3-212ENST00000590181 WNT10AQ9GZT5 417 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 PPIL3Q9H2H8 161 aaKnown RBP8.42□□□□□ -1.06
LIG3-212ENST00000590181 Q9H521 79 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 ZNF702PQ9H963 129 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 ZNF286AQ9HBT8 521 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 TRAPPC2LQ9UL33 140 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 RAB26Q9ULW5 256 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 PSG11Q9UQ72 335 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 LSM2Q9Y333 95 aaKnown RBP8.42□□□□□ -1.06
LIG3-212ENST00000590181 TENM3Q9P273 2699 aa8.42□□□□□ -1.06
LIG3-212ENST00000590181 G3V4G9 280 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 CHST1O43916 411 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 PDCD6O75340 191 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 CRTAPO75718 401 aaPredicted RBP8.41□□□□□ -1.06
LIG3-212ENST00000590181 MMP23AO75900 390 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 PRB2P02812 416 aaPredicted RBP8.41□□□□□ -1.06
LIG3-212ENST00000590181 CPEP16870 476 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 CRHBPP24387 322 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 VDAC2P45880 294 aaPredicted RBP8.41□□□□□ -1.06
LIG3-212ENST00000590181 RAB13P51153 203 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 AQP4P55087 323 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 HTD2P86397 168 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 EBI3Q14213 229 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 HABP2Q14520 560 aaPredicted RBP8.41□□□□□ -1.06
LIG3-212ENST00000590181 ARSJQ5FYB0 599 aaPredicted RBP8.41□□□□□ -1.06
LIG3-212ENST00000590181 LDLRAD2Q5SZI1 272 aa8.41□□□□□ -1.06
LIG3-212ENST00000590181 RAB12Q6IQ22 244 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms