RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ANXA3P12429 323 aa8.8□□□□□ -1
SS18-217ENST00000580958 CD34P28906 385 aa8.8□□□□□ -1
SS18-217ENST00000580958 NKX2-5P52952 324 aaPredicted RBP8.8□□□□□ -1
SS18-217ENST00000580958 DHODHQ02127 395 aa8.8□□□□□ -1
SS18-217ENST00000580958 AESQ08117 197 aa8.8□□□□□ -1
SS18-217ENST00000580958 SWI5Q1ZZU3 235 aa8.8□□□□□ -1
SS18-217ENST00000580958 ZFP69Q49AA0 526 aa8.8□□□□□ -1
SS18-217ENST00000580958 FAHD2BQ6P2I3 314 aaPredicted RBP8.8□□□□□ -1
SS18-217ENST00000580958 DEFB108BQ8NET1 73 aa8.8□□□□□ -1
SS18-217ENST00000580958 TMEM185AQ8NFB2 350 aa8.8□□□□□ -1
SS18-217ENST00000580958 OR4A4PQ8NGN8 299 aa8.8□□□□□ -1
SS18-217ENST00000580958 ANGPTL6Q8NI99 470 aa8.8□□□□□ -1
SS18-217ENST00000580958 UBALD1Q8TB05 177 aa8.8□□□□□ -1
SS18-217ENST00000580958 MOB3AQ96BX8 217 aa8.8□□□□□ -1
SS18-217ENST00000580958 FAHD2AQ96GK7 314 aa8.8□□□□□ -1
SS18-217ENST00000580958 SNX22Q96L94 193 aa8.8□□□□□ -1
SS18-217ENST00000580958 CABLES2Q9BTV7 478 aa8.8□□□□□ -1
SS18-217ENST00000580958 CHIAQ9BZP6 476 aa8.8□□□□□ -1
SS18-217ENST00000580958 ZNF436Q9C0F3 470 aaPredicted RBP8.8□□□□□ -1
SS18-217ENST00000580958 SHARPINQ9H0F6 387 aa8.8□□□□□ -1
SS18-217ENST00000580958 SAP30LQ9HAJ7 183 aa8.8□□□□□ -1
SS18-217ENST00000580958 SLC23A1Q9UHI7 598 aa8.8□□□□□ -1
SS18-217ENST00000580958 KIF25Q9UIL4 384 aa8.8□□□□□ -1
SS18-217ENST00000580958 MGAT4AQ9UM21 535 aa8.8□□□□□ -1
SS18-217ENST00000580958 RELNP78509 3460 aa8.8□□□□□ -1
SS18-217ENST00000580958 FAM172BPA6NC97 362 aa8.79□□□□□ -1
SS18-217ENST00000580958 OOEPA6NGQ2 149 aa8.79□□□□□ -1
SS18-217ENST00000580958 LRRC30A6NM36 301 aa8.79□□□□□ -1
SS18-217ENST00000580958 B8ZZF3 427 aa8.79□□□□□ -1
SS18-217ENST00000580958 GOSR2O14653 212 aa8.79□□□□□ -1
SS18-217ENST00000580958 SIX6O95475 246 aa8.79□□□□□ -1
SS18-217ENST00000580958 SFT2D2O95562 160 aa8.79□□□□□ -1
SS18-217ENST00000580958 DIRAS3O95661 229 aa8.79□□□□□ -1
SS18-217ENST00000580958 PPYP01298 95 aa8.79□□□□□ -1
SS18-217ENST00000580958 TK1P04183 234 aa8.79□□□□□ -1
SS18-217ENST00000580958 CTXN2P0C2S0 81 aa8.79□□□□□ -1
SS18-217ENST00000580958 VAMP1P23763 118 aa8.79□□□□□ -1
SS18-217ENST00000580958 SNRPD2P62316 118 aaKnown RBP8.79□□□□□ -1
SS18-217ENST00000580958 EDDM3AQ14507 147 aa8.79□□□□□ -1
SS18-217ENST00000580958 HMGN3Q15651 99 aa8.79□□□□□ -1
SS18-217ENST00000580958 KRBOX4Q5JUW0 171 aa8.79□□□□□ -1
SS18-217ENST00000580958 STUMQ69YW2 141 aa8.79□□□□□ -1
SS18-217ENST00000580958 LIN54Q6MZP7 749 aa8.79□□□□□ -1
SS18-217ENST00000580958 NLRC3Q7RTR2 1065 aa8.79□□□□□ -1
SS18-217ENST00000580958 MUC15Q8N387 334 aa8.79□□□□□ -1
SS18-217ENST00000580958 PPP1R35Q8TAP8 253 aa8.79□□□□□ -1
SS18-217ENST00000580958 ZFAND1Q8TCF1 268 aa8.79□□□□□ -1
SS18-217ENST00000580958 CASTOR1Q8WTX7 329 aa8.79□□□□□ -1
SS18-217ENST00000580958 KIRREL1Q96J84 757 aa8.79□□□□□ -1
SS18-217ENST00000580958 MS4A5Q9H3V2 200 aa8.79□□□□□ -1
SS18-217ENST00000580958 MBNL3Q9NUK0 354 aaKnown RBP8.79□□□□□ -1
SS18-217ENST00000580958 ADGRG4Q8IZF6 3080 aa8.78□□□□□ -1
SS18-217ENST00000580958 HRNRQ86YZ3 2850 aaPredicted RBP8.78□□□□□ -1
SS18-217ENST00000580958 TRBV6-7A0A0A0MS04 114 aa8.78□□□□□ -1
SS18-217ENST00000580958 A0A1B0GW55 424 aa8.78□□□□□ -1
SS18-217ENST00000580958 TMEM178BH3BS89 294 aa8.78□□□□□ -1
SS18-217ENST00000580958 LGALS8O00214 317 aa8.78□□□□□ -1
SS18-217ENST00000580958 MGST3O14880 152 aa8.78□□□□□ -1
SS18-217ENST00000580958 TUSC2O75896 110 aa8.78□□□□□ -1
SS18-217ENST00000580958 GYPAP02724 150 aa8.78□□□□□ -1
SS18-217ENST00000580958 C1QBP02746 253 aa8.78□□□□□ -1
SS18-217ENST00000580958 DUX4L2P0CJ85 424 aa8.78□□□□□ -1
SS18-217ENST00000580958 DUX4L3P0CJ86 424 aa8.78□□□□□ -1
SS18-217ENST00000580958 DUX4L4P0CJ87 422 aa8.78□□□□□ -1
SS18-217ENST00000580958 DUX4L5P0CJ88 424 aa8.78□□□□□ -1
SS18-217ENST00000580958 DUX4L6P0CJ89 424 aa8.78□□□□□ -1
SS18-217ENST00000580958 DUX4L7P0CJ90 424 aa8.78□□□□□ -1
SS18-217ENST00000580958 SELLP14151 372 aa8.78□□□□□ -1
SS18-217ENST00000580958 GLIPR1P48060 266 aa8.78□□□□□ -1
SS18-217ENST00000580958 UCP3P55916 312 aa8.78□□□□□ -1
SS18-217ENST00000580958 SUPT4H1P63272 117 aaKnown RBP8.78□□□□□ -1
SS18-217ENST00000580958 IL13RA1P78552 427 aa8.78□□□□□ -1
SS18-217ENST00000580958 SLC9A3R2Q15599 337 aa8.78□□□□□ -1
SS18-217ENST00000580958 TMEM128Q5BJH2 165 aa8.78□□□□□ -1
SS18-217ENST00000580958 TEX36Q5VZQ5 186 aa8.78□□□□□ -1
SS18-217ENST00000580958 DUX4L9Q6RFH8 374 aaPredicted RBP8.78□□□□□ -1
SS18-217ENST00000580958 ZNF843Q8N446 348 aa8.78□□□□□ -1
SS18-217ENST00000580958 PRR18Q8N4B5 295 aa8.78□□□□□ -1
SS18-217ENST00000580958 TPRX1Q8N7U7 411 aa8.78□□□□□ -1
SS18-217ENST00000580958 OR1L1Q8NH94 360 aa8.78□□□□□ -1
SS18-217ENST00000580958 MITD1Q8WV92 249 aa8.78□□□□□ -1
SS18-217ENST00000580958 IL1F10Q8WWZ1 152 aa8.78□□□□□ -1
SS18-217ENST00000580958 SDSLQ96GA7 329 aa8.78□□□□□ -1
SS18-217ENST00000580958 GAFA1Q96PS6 74 aa8.78□□□□□ -1
SS18-217ENST00000580958 VRK1Q99986 396 aaPredicted RBP8.78□□□□□ -1
SS18-217ENST00000580958 DCTN5Q9BTE1 182 aa8.78□□□□□ -1
SS18-217ENST00000580958 TAF9BQ9HBM6 251 aa8.78□□□□□ -1
SS18-217ENST00000580958 DLL4Q9NR61 685 aa8.78□□□□□ -1
SS18-217ENST00000580958 KCNIP1Q9NZI2 227 aa8.78□□□□□ -1
SS18-217ENST00000580958 OR1A1Q9P1Q5 309 aa8.78□□□□□ -1
SS18-217ENST00000580958 DUX4Q9UBX2 424 aa8.78□□□□□ -1
SS18-217ENST00000580958 PCDHB10Q9UN67 800 aa8.78□□□□□ -1
SS18-217ENST00000580958 MAB21L2Q9Y586 359 aa8.78□□□□□ -1
SS18-217ENST00000580958 EPG5Q9HCE0 2579 aa8.78□□□□□ -1
SS18-217ENST00000580958 IGKV1D-13A0A0B4J2D9 117 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 C12orf77C9JDV5 145 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 NPIPB11E5RHQ5 1161 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 K7N7A8 449 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 SLC22A5O76082 557 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 IGKV1-13P0DP09 117 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms