RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 OR3A3P47888 321 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 ERVFRD-1P60508 538 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 CDK10Q15131 360 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 KCNJ8Q15842 424 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 SCGB2B2Q4G0G5 96 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 MZT2BQ6NZ67 158 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 CCBE1Q6UXH8 406 aaPredicted RBP20.78■□□□□ 0.92
SHMT1-207ENST00000580002 Q6ZS49 121 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 KIRREL1Q96J84 757 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 FLVCR2Q9UPI3 526 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 FAM240BA0A1B0GVZ2 78 aa20.77■□□□□ 0.92
SHMT1-207ENST00000580002 CENPXA8MT69 81 aa20.77■□□□□ 0.92
SHMT1-207ENST00000580002 HLA-DRB3P79483 266 aa20.77■□□□□ 0.92
SHMT1-207ENST00000580002 PAX5Q02548 391 aa20.77■□□□□ 0.92
SHMT1-207ENST00000580002 TRIM16LQ309B1 348 aa20.77■□□□□ 0.92
SHMT1-207ENST00000580002 H1FXQ92522 213 aaKnown RBP20.77■□□□□ 0.92
SHMT1-207ENST00000580002 BET1O15155 118 aa20.77■□□□□ 0.91
SHMT1-207ENST00000580002 PTTG1O95997 202 aa20.77■□□□□ 0.91
SHMT1-207ENST00000580002 PDLIM4P50479 330 aa20.77■□□□□ 0.91
SHMT1-207ENST00000580002 SRSF7Q16629 238 aaKnown RBP eCLIP20.77■□□□□ 0.91
SHMT1-207ENST00000580002 TMEM155Q4W5P6 130 aa20.77■□□□□ 0.91
SHMT1-207ENST00000580002 MUC20Q8N307 709 aaPredicted RBP20.77■□□□□ 0.91
SHMT1-207ENST00000580002 C7orf50Q9BRJ6 194 aaKnown RBP20.77■□□□□ 0.91
SHMT1-207ENST00000580002 ANKRD17O75179 2603 aaKnown RBP20.77■□□□□ 0.91
SHMT1-207ENST00000580002 H7C1Q1 480 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 OR5H8P0DN80 308 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 ERP29P30040 261 aaKnown RBP20.76■□□□□ 0.91
SHMT1-207ENST00000580002 TAS2R46P59540 309 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 ZNF273Q14593 569 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 HMGN3Q15651 99 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 LRRC10Q5BKY1 277 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 VAX1Q5SQQ9 334 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 UTF1Q5T230 341 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 OR13C8Q8NGS7 320 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 IL1F10Q8WWZ1 152 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 OR1A1Q9P1Q5 309 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 NAV2Q8IVL1 2488 aa20.76■□□□□ 0.91
SHMT1-207ENST00000580002 ARHGAP32A7KAX9 2087 aa20.75■□□□□ 0.91
SHMT1-207ENST00000580002 C15orf65H3BRN8 121 aa20.75■□□□□ 0.91
SHMT1-207ENST00000580002 PHF1O43189 567 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-207ENST00000580002 NFYAP23511 347 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-207ENST00000580002 OMGP23515 440 aa20.75■□□□□ 0.91
SHMT1-207ENST00000580002 ENKURQ8TC29 256 aa20.75■□□□□ 0.91
SHMT1-207ENST00000580002 GSX2Q9BZM3 304 aa20.75■□□□□ 0.91
SHMT1-207ENST00000580002 PATZ1Q9HBE1 687 aaKnown RBP20.75■□□□□ 0.91
SHMT1-207ENST00000580002 PCDHB10Q9UN67 800 aa20.75■□□□□ 0.91
SHMT1-207ENST00000580002 HBZP02008 142 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 CGB3P0DN86 165 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 CGB7P0DN87 165 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 PAX1P15863 534 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 LTC4SQ16873 150 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 ZNF660Q6AZW8 331 aaPredicted RBP20.74■□□□□ 0.91
SHMT1-207ENST00000580002 DUSP18Q8NEJ0 188 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 FAM168AQ92567 244 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 ARL11Q969Q4 196 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 UPRTQ96BW1 309 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 PARP12Q9H0J9 701 aaKnown RBP20.74■□□□□ 0.91
SHMT1-207ENST00000580002 UNC79Q9P2D8 2635 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 IGHV4-30-2A0A087WSY4 118 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 NAP1L6A6NFF2 107 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 TCRBP04435 133 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 IFNA6P05013 189 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 FAUP35544 74 aaKnown RBP20.74■□□□□ 0.91
SHMT1-207ENST00000580002 RAB25P57735 213 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 TSPAN5P62079 268 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 MEF2DQ14814 521 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 C17orf58Q2M2W7 97 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 TMEM200BQ69YZ2 307 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 IDO2Q6ZQW0 420 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 C10orf105Q8TEF2 133 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 NEIL1Q96FI4 390 aaPredicted RBP20.74■□□□□ 0.91
SHMT1-207ENST00000580002 NECAP2Q9NVZ3 263 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 MIOXQ9UGB7 285 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 DSCAML1Q8TD84 2053 aa20.74■□□□□ 0.91
SHMT1-207ENST00000580002 TRAV6A0A075B6T7 132 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 IGHV3-43A0A0B4J1X8 118 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 KIR2DS1A0A191URI9 304 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 DISC1C4P0D8 188 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 IGHV3-43DP0DP04 118 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 TBPP20226 339 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 KIR2DS4P43632 304 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 RPL31P62899 125 aaKnown RBP20.73■□□□□ 0.91
SHMT1-207ENST00000580002 KIR2DS1Q14954 304 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 WDR25Q64LD2 544 aaPredicted RBP20.73■□□□□ 0.91
SHMT1-207ENST00000580002 MOB1BQ7L9L4 216 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 SPICQ8N5J4 248 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 OR52L2PQ8NGH6 319 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 ZNF2Q9BSG1 426 aaPredicted RBP20.73■□□□□ 0.91
SHMT1-207ENST00000580002 DPAGT1Q9H3H5 408 aa20.73■□□□□ 0.91
SHMT1-207ENST00000580002 OR5H14A6NHG9 310 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 MMP23AO75900 390 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 CCL3L1P16619 93 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 FCGR2CP31995 323 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 GNMTQ14749 295 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 CR1LQ2VPA4 569 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 ACTBL2Q562R1 376 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 BTN2A1Q7KYR7 527 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 OR8B3Q8NGG8 313 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 CLDND2Q8NHS1 167 aa20.72■□□□□ 0.91
SHMT1-207ENST00000580002 CREB3L1Q96BA8 519 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms