RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 J3QR06 171 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 M0QZ24 198 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 ORC5O43913 435 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 CA11O75493 328 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 ATP6V1G2O95670 118 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 MGMTP16455 207 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 SRMP19623 302 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 PSMA1P25786 263 aaKnown RBP11.93□□□□□ -0.5
SS18-212ENST00000579061 HSD17B12Q53GQ0 312 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 C1orf100Q5SVJ3 147 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 TPTE2P1Q5T6R2 138 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 FAM27D1Q5T7N8 215 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 LIPKQ5VXJ0 399 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 CCDC144NLQ6NUI1 221 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 TREML4Q6UXN2 200 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 CEACAM19Q7Z692 300 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 LRRTM1Q86UE6 522 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 OR52M1Q8NGK5 317 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 NEK7Q8TDX7 302 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 Q96M66 194 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 CST11Q9H112 138 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 RAB9BQ9NP90 201 aa11.93□□□□□ -0.5
SS18-212ENST00000579061 TET2Q6N021 2002 aaPredicted RBP11.93□□□□□ -0.5
SS18-212ENST00000579061 CMYA5Q8N3K9 4069 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 CRTAPO75718 401 aaPredicted RBP11.92□□□□□ -0.5
SS18-212ENST00000579061 MT-ND4P03905 459 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 CPEP16870 476 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 JUNBP17275 347 aaPredicted RBP11.92□□□□□ -0.5
SS18-212ENST00000579061 FUT3P21217 361 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 VHLP40337 213 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 RAB12Q6IQ22 244 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 TMEM219Q86XT9 240 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 GAPTQ8N292 157 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 TMEM104Q8NE00 496 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 RFESDQ8TAC1 157 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 CNBD2Q96M20 576 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 SELENOIQ9C0D9 397 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 PRSS22Q9GZN4 317 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 CCDC90BQ9GZT6 254 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 BANF2Q9H503 90 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 ZNF702PQ9H963 129 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 PSG11Q9UQ72 335 aa11.92□□□□□ -0.5
SS18-212ENST00000579061 C15orf65H3BRN8 121 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 AIPO00170 330 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 HSMCR30P0CW71 290 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 SSTR5P35346 364 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 MNDAP41218 407 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 HERPUD1Q15011 391 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 TBCEQ15813 527 aaPredicted RBP11.91□□□□□ -0.5
SS18-212ENST00000579061 TMEM30BQ3MIR4 351 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 Q3ZCU0 254 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 UTF1Q5T230 341 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 ARL11Q969Q4 196 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 AKR1E2Q96JD6 320 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 MGLLQ99685 303 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 LIN7BQ9HAP6 207 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 ETAA1Q9NY74 926 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 SIGLEC9Q9Y336 463 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 PEX16Q9Y5Y5 336 aa11.91□□□□□ -0.5
SS18-212ENST00000579061 TRAV39A0A0B4J263 110 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 SLC22A1O15245 554 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 MRPS14O60783 128 aaKnown RBP11.9□□□□□ -0.5
SS18-212ENST00000579061 PDCD6O75340 191 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 ARL6IP5O75915 188 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 HTR2CP28335 458 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 RANBP1P43487 201 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 MADCAM1Q13477 382 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 C6orf183Q5T699 404 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 SIGIRRQ6IA17 410 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 TRAT1Q6PIZ9 186 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 TMEM91Q6ZNR0 172 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 Q6ZTK2 550 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 THNSL2Q86YJ6 484 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 LINC00311Q8N616 119 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 C8orf31Q8N9H6 132 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 TMEM203Q969S6 136 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 RPEQ96AT9 228 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 SERTAD4Q9NUC0 356 aa11.9□□□□□ -0.5
SS18-212ENST00000579061 FAM90A9PA6NNJ1 464 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 RRP9O43818 475 aaKnown RBP11.89□□□□□ -0.51
SS18-212ENST00000579061 OR2F2O95006 317 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 MPIG6BO95866 241 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 VSIG8P0DPA2 414 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 RAB7AP51149 207 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 GABARAPL2P60520 117 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 RPS25P62851 125 aaKnown RBP11.89□□□□□ -0.51
SS18-212ENST00000579061 LTC4SQ16873 150 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 ZNF367Q7RTV3 350 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 ZNF554Q86TJ5 538 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 OR8H3Q8N146 312 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 KLHDC1Q8N7A1 406 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 OR6M1Q8NGM8 313 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 KCNG3Q8TAE7 436 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 CCDC107Q8WV48 283 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 CFHR4Q92496 578 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 TOMM40LQ969M1 308 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 RBM14Q96PK6 669 aaKnown RBP11.89□□□□□ -0.51
SS18-212ENST00000579061 MMP27Q9H306 513 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 GFOD1Q9NXC2 390 aa11.89□□□□□ -0.51
SS18-212ENST00000579061 TRAPPC2LQ9UL33 140 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms