RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 PAK1IP1Q9NWT1 392 aaPredicted RBP5.74□□□□□ -1.49
VPS53-217ENST00000575100 B4GALT7Q9UBV7 327 aa5.74□□□□□ -1.49
VPS53-217ENST00000575100 FBN2P35556 2912 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 H7C1C5 153 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 SULT2B1O00204 365 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 DCTN6O00399 190 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 OR2T1O43869 369 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 CXCL13O43927 109 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 PPBPP02775 128 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 ZNF708P17019 499 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 C21orf33P30042 268 aaPredicted RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 AKR1D1P51857 326 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 LCN6P62502 163 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 SLC10A1Q14973 349 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 KRTAP21-3Q3LHN1 58 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 MESTQ5EB52 335 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 SSX7Q7RTT5 188 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 OR4K13Q8NH42 304 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 OR10D3Q8NH80 312 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 NEIL3Q8TAT5 605 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 ERMAPQ96PL5 475 aaPredicted RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 TSPAN32Q96QS1 320 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 GPX7Q96SL4 187 aaPredicted RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 YTHDF1Q9BYJ9 559 aaKnown RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 CSTL1Q9H114 145 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 RETNQ9HD89 108 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 MED29Q9NX70 200 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 DNAJC27Q9NZQ0 273 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 PPP1R3CQ9UQK1 317 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 PAM16Q9Y3D7 125 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 GOLT1BQ9Y3E0 138 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 HDGFL3Q9Y3E1 203 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 IER3IP1Q9Y5U9 82 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 MED13LQ71F56 2210 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 TRGV5A0A0B4J1U4 118 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 ENTPD6O75354 484 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 PMS2P2O95744 297 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 GYPBP06028 91 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 RPL4P36578 427 aaKnown RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 DDOSTP39656 456 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 CDKN2AP42771 156 aaKnown RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 LSM6P62312 80 aaKnown RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 BLOC1S1P78537 153 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 POU3F1Q03052 451 aaPredicted RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 RIPPLY1Q0D2K3 151 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 RAB40BQ12829 278 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 PIK3CD-AS1Q5SR53 167 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 HBMQ6B0K9 141 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 CASP12Q6UXS9 341 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 Q8N402 240 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 OR52L1Q8NGH7 329 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 RNASEH2CQ8TDP1 164 aaKnown RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 SDSLQ96GA7 329 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 NMNAT3Q96T66 252 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 APOL4Q9BPW4 351 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 EMC6Q9BV81 110 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 TAPBPLQ9BX59 468 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 Q9H521 79 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 ZNF430Q9H8G1 570 aaPredicted RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 BEX1Q9HBH7 125 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 IMPAD1Q9NX62 359 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 BABAM2Q9NXR7 383 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 ING1Q9UK53 422 aaPredicted RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 POU2F3Q9UKI9 436 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 TRAPPC4Q9Y296 219 aa5.73□□□□□ -1.49
VPS53-217ENST00000575100 RCL1Q9Y2P8 373 aaKnown RBP5.73□□□□□ -1.49
VPS53-217ENST00000575100 KIAA1549Q9HCM3 1950 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 ALPK2Q86TB3 2170 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 PKDREJQ9NTG1 2253 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 SULT1C2O00338 296 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 SLC1A7O00341 560 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 TRAF3IP2O43734 574 aaPredicted RBP5.72□□□□□ -1.49
VPS53-217ENST00000575100 IFNA4P05014 189 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 CD14P08571 375 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 HTR1AP08908 422 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 EGR2P11161 476 aaPredicted RBP5.72□□□□□ -1.49
VPS53-217ENST00000575100 CRHBPP24387 322 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 EDNRAP25101 427 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 CFPP27918 469 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 CDC42P60953 191 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 RPL27P61353 136 aaKnown RBP5.72□□□□□ -1.49
VPS53-217ENST00000575100 NUTF2P61970 127 aaKnown RBP5.72□□□□□ -1.49
VPS53-217ENST00000575100 ZNF239Q16600 458 aaKnown RBP5.72□□□□□ -1.49
VPS53-217ENST00000575100 OTPQ5XKR4 325 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 ATRAIDQ6UW56 229 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 SSX6Q7RTT6 188 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 CCDC54Q8NEL0 328 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 BPIFB6Q8NFQ5 453 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 OR52E2Q8NGJ4 325 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 OR9Q1Q8NGQ5 310 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 ABHD3Q8WU67 409 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 Q96MF0 132 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 WFIKKN1Q96NZ8 548 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 PFDN5Q99471 154 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 CMC2Q9NRP2 79 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 TCF19Q9Y242 345 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 ALG5Q9Y673 324 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 CACNA1CQ13936 2221 aa5.72□□□□□ -1.49
VPS53-217ENST00000575100 IGKV1D-43A0A0B4J1Z2 117 aa5.71□□□□□ -1.49
VPS53-217ENST00000575100 A0A1B0GTH9 108 aa5.71□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms