RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 LINC00527Q9UJ94 153 aa14.32□□□□□ -0.12
CHD3-214ENST00000572579 MOB4Q9Y3A3 225 aa14.32□□□□□ -0.12
CHD3-214ENST00000572579 HSPE1-MOB4S4R3N1 261 aa14.32□□□□□ -0.12
CHD3-214ENST00000572579 IGHV3-72A0A0B4J1Y9 119 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 CD2P06729 351 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 GNAO1P09471 354 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 CD33P20138 364 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 REG1BP48304 166 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 ARHGDIBP52566 201 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 EBI3Q14213 229 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 SLC22A6Q4U2R8 563 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 SLC16A12Q6ZSM3 486 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 C5orf24Q7Z6I8 188 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 Q8N6K4 173 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 ST6GALNAC6Q969X2 333 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 CPNE2Q96FN4 548 aaPredicted RBP14.31□□□□□ -0.12
CHD3-214ENST00000572579 TMEM80Q96HE8 168 aa14.31□□□□□ -0.12
CHD3-214ENST00000572579 ZNF736B4DX44 427 aaPredicted RBP14.3□□□□□ -0.12
CHD3-214ENST00000572579 K7EIL1 84 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 M0QZK8 103 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 SLC31A2O15432 143 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 IGKV1D-33P01593 117 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 IGKV1-33P01594 117 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 PF4V1P10720 104 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 GZMHP20718 246 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 ZNF134P52741 427 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 PPP3R1P63098 170 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 RIPK1Q13546 671 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 ZNF497Q6ZNH5 498 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 LINC00482Q8N8I6 264 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 TMEM104Q8NE00 496 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 CYGBQ8WWM9 190 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 ARL11Q969Q4 196 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 PCDHB16Q9NRJ7 776 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 PLSCR3Q9NRY6 295 aa14.3□□□□□ -0.12
CHD3-214ENST00000572579 EXOSC1Q9Y3B2 195 aaKnown RBP14.3□□□□□ -0.12
CHD3-214ENST00000572579 AMMECR1Q9Y4X0 333 aaPredicted RBP14.3□□□□□ -0.12
CHD3-214ENST00000572579 IGHV3-43A0A0B4J1X8 118 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 IGHV1-3A0A0C4DH29 117 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 TMEM30CPA0ZSE6 113 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 PSMB11A5LHX3 300 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 EBAG9O00559 213 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 IGHV3-43DP0DP04 118 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 TMEM11P17152 192 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 VHLP40337 213 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 RAB7AP51149 207 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 ZNF816Q0VGE8 651 aaPredicted RBP14.29□□□□□ -0.12
CHD3-214ENST00000572579 ST3GAL4Q11206 333 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 HES1Q14469 280 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 Q499Y3 187 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 ATAD3CQ5T2N8 411 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 OR8H3Q8N146 312 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 LINC00311Q8N616 119 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 OR4X2Q8NGF9 303 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 OR10X1Q8NGY0 326 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 MUL1Q969V5 352 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 EAF1Q96JC9 268 aaPredicted RBP14.29□□□□□ -0.12
CHD3-214ENST00000572579 OR14A2Q96R54 314 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 GFOD1Q9NXC2 390 aa14.29□□□□□ -0.12
CHD3-214ENST00000572579 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.29□□□□□ -0.12
CHD3-214ENST00000572579 RCC2Q9P258 522 aaKnown RBP14.29□□□□□ -0.12
CHD3-214ENST00000572579 HSD17B6O14756 317 aa14.28□□□□□ -0.12
CHD3-214ENST00000572579 MPIG6BO95866 241 aa14.28□□□□□ -0.12
CHD3-214ENST00000572579 CSTBP04080 98 aaKnown RBP14.28□□□□□ -0.12
CHD3-214ENST00000572579 GTF2F2P13984 249 aa14.28□□□□□ -0.12
CHD3-214ENST00000572579 GP2P55259 537 aaKnown RBP14.28□□□□□ -0.12
CHD3-214ENST00000572579 MPV17LQ2QL34 196 aa14.28□□□□□ -0.12
CHD3-214ENST00000572579 YIF1BQ5BJH7 314 aa14.28□□□□□ -0.12
CHD3-214ENST00000572579 SIGIRRQ6IA17 410 aa14.28□□□□□ -0.12
CHD3-214ENST00000572579 GLIPR1L1Q6UWM5 242 aa14.28□□□□□ -0.12
CHD3-214ENST00000572579 MRPL41Q8IXM3 137 aaKnown RBP14.28□□□□□ -0.12
CHD3-214ENST00000572579 GAPTQ8N292 157 aa14.28□□□□□ -0.12
CHD3-214ENST00000572579 OR52M1Q8NGK5 317 aa14.28□□□□□ -0.12
CHD3-214ENST00000572579 FBLIM1Q8WUP2 373 aa14.28□□□□□ -0.12
CHD3-214ENST00000572579 KMT2CQ8NEZ4 4911 aaKnown RBP14.27□□□□□ -0.12
CHD3-214ENST00000572579 PNMA8CA0A1B0GUJ8 204 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 WI2-2373I1.2A0A1W2PRP0 233 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 C12orf77C9JDV5 145 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 CCRL2O00421 344 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 SDCBPO00560 298 aaPredicted RBP14.27□□□□□ -0.13
CHD3-214ENST00000572579 FGF16O43320 207 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 ORC5O43913 435 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 IGHG2P01859 326 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 MYL12AP19105 171 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 FSTP19883 344 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 RPL23AP62750 156 aaKnown RBP14.27□□□□□ -0.13
CHD3-214ENST00000572579 KHDC1LQ5JSQ8 128 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 TTC23Q5W5X9 447 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 OR2W3Q7Z3T1 314 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 MOB3BQ86TA1 216 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 LINC00596Q86U02 117 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 C8orf31Q8N9H6 132 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 Q8N9W7 124 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 ZNF439Q8NDP4 499 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 DERL3Q96Q80 235 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 BANF2Q9H503 90 aa14.27□□□□□ -0.13
CHD3-214ENST00000572579 IRGMA1A4Y4 181 aa14.26□□□□□ -0.13
CHD3-214ENST00000572579 PF4P02776 101 aa14.26□□□□□ -0.13
CHD3-214ENST00000572579 GAPDHP04406 335 aaKnown RBP14.26□□□□□ -0.13
CHD3-214ENST00000572579 HOXD3P31249 432 aaPredicted RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms