RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RHBDD3Q9Y3P4 386 aa9.42□□□□□ -0.9
CLK3-226ENST00000569406 CABIN1Q9Y6J0 2220 aa9.42□□□□□ -0.9
CLK3-226ENST00000569406 IGLC7A0M8Q6 106 aa9.42□□□□□ -0.9
CLK3-226ENST00000569406 LYL1P12980 280 aa9.42□□□□□ -0.9
CLK3-226ENST00000569406 OTX1P32242 354 aaPredicted RBP9.42□□□□□ -0.9
CLK3-226ENST00000569406 ATP5J2P56134 94 aa9.42□□□□□ -0.9
CLK3-226ENST00000569406 CLDN6P56747 220 aa9.42□□□□□ -0.9
CLK3-226ENST00000569406 LTC4SQ16873 150 aa9.42□□□□□ -0.9
CLK3-226ENST00000569406 TRMT12Q53H54 448 aaKnown RBP9.42□□□□□ -0.9
CLK3-226ENST00000569406 CCDC144NLQ6NUI1 221 aa9.42□□□□□ -0.9
CLK3-226ENST00000569406 MFSD12Q6NUT3 480 aa9.42□□□□□ -0.9
CLK3-226ENST00000569406 FAM3DQ96BQ1 224 aa9.42□□□□□ -0.9
CLK3-226ENST00000569406 RTBDNQ9BSG5 229 aaPredicted RBP9.42□□□□□ -0.9
CLK3-226ENST00000569406 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 FAM166BA8MTA8 275 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 TAX1BP3O14907 124 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 ST8SIA3O43173 380 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 XRCC2O43543 280 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 FOXS1O43638 330 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 FHL1Q13642 323 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 LRRC10Q5BKY1 277 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 DGAT2L6Q6ZPD8 337 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 MRGPRGQ86SM5 289 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 TGIF2LYQ8IUE0 185 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 OR2T10Q8NGZ9 312 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 RSG1Q9BU20 258 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 CHRDL1Q9BU40 450 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 Q9N2K0 584 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 OR51B2Q9Y5P1 312 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 IER3IP1Q9Y5U9 82 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 ZNF716A6NP11 495 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 RPS27P42677 84 aaKnown RBP9.41□□□□□ -0.9
CLK3-226ENST00000569406 TLE1Q04724 770 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 HIST3H3Q16695 136 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 ANKRD55Q3KP44 614 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 MPV17L2Q567V2 206 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 ZNF684Q5T5D7 378 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 BAGE3Q86Y29 109 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 BAGE2Q86Y30 109 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 DAPP1Q9UN19 280 aa9.41□□□□□ -0.9
CLK3-226ENST00000569406 MRPS16Q9Y3D3 137 aaKnown RBP9.41□□□□□ -0.9
CLK3-226ENST00000569406 TDRD6O60522 2096 aaKnown RBP9.41□□□□□ -0.9
CLK3-226ENST00000569406 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.4□□□□□ -0.9
CLK3-226ENST00000569406 FAM230AA0A1W2PPH8 454 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 METTL12A8MUP2 240 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 ALG1L2C9J202 215 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 CCL2P13500 99 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 P2RY1P47900 373 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 PPOXP50336 477 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 SSBP1Q04837 148 aaKnown RBP9.4□□□□□ -0.9
CLK3-226ENST00000569406 TMEM128Q5BJH2 165 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 POC1AQ8NBT0 407 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 HOXB13Q92826 284 aaPredicted RBP9.4□□□□□ -0.9
CLK3-226ENST00000569406 TNFRSF13CQ96RJ3 184 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 IMMP2LQ96T52 175 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 EHFQ9NZC4 300 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 VDAC3Q9Y277 283 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 K7N7A8 449 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 CT62P0C5K7 136 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 IL9P15248 144 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 GATA3P23771 443 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 GPR6P46095 362 aaPredicted RBP9.4□□□□□ -0.9
CLK3-226ENST00000569406 ZP4Q12836 540 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 MSMO1Q15800 293 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 PSG3Q16557 428 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 RAET1LQ5VY80 246 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 SPSB3Q6PJ21 355 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 SIGLECL1Q8N7X8 197 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 NPEPL1Q8NDH3 523 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 OR10G3Q8NGC4 313 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 OR51G1Q8NGK1 321 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 CDC42EP3Q9UKI2 254 aa9.4□□□□□ -0.9
CLK3-226ENST00000569406 IGHV4-34P06331 123 aa9.4□□□□□ -0.91
CLK3-226ENST00000569406 TAS2R31P59538 309 aa9.4□□□□□ -0.91
CLK3-226ENST00000569406 NANOS3P60323 173 aaKnown RBP9.4□□□□□ -0.91
CLK3-226ENST00000569406 UBE2NP61088 152 aaKnown RBP9.4□□□□□ -0.91
CLK3-226ENST00000569406 MRPL2Q5T653 305 aaKnown RBP9.4□□□□□ -0.91
CLK3-226ENST00000569406 ZAR1Q86SH2 424 aa9.4□□□□□ -0.91
CLK3-226ENST00000569406 TRAPPC6BQ86SZ2 158 aa9.4□□□□□ -0.91
CLK3-226ENST00000569406 SDF2L1Q9HCN8 221 aa9.4□□□□□ -0.91
CLK3-226ENST00000569406 TRAV8-6A0A0B4J262 113 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 SHISA8B8ZZ34 492 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 TGFBR3LH3BV60 316 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 CMPK1P30085 196 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 MPLP40238 635 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 CTRLP40313 264 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 Q499Y3 187 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 TCF24Q7RTU0 167 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 YAF2Q8IY57 180 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 C20orf141Q9NUB4 165 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 MRPL27Q9P0M9 148 aaKnown RBP9.39□□□□□ -0.91
CLK3-226ENST00000569406 NAT8Q9UHE5 227 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 THADAQ6YHU6 1953 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 PRKNO60260 465 aaPredicted RBP9.39□□□□□ -0.91
CLK3-226ENST00000569406 SERF1AO75920 110 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 PVRP15151 417 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 ZNF93P35789 620 aaPredicted RBP9.39□□□□□ -0.91
CLK3-226ENST00000569406 RPS15AP62244 130 aaKnown RBP9.39□□□□□ -0.91
CLK3-226ENST00000569406 ZNF506Q5JVG8 444 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 Q96M85 177 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms