RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 OPN1MWP04001 364 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 OPN1MW2P0DN77 364 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 OPN1MW3P0DN78 364 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 TRAM1Q15629 374 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 C2orf76Q3KRA6 126 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 MOGAT2Q3SYC2 334 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 NHLRC3Q5JS37 347 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 SYT6Q5T7P8 510 aaPredicted RBP11.21□□□□□ -0.61
CLN3-235ENST00000568497 CD200R1LQ6Q8B3 271 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 PRR18Q8N4B5 295 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 CHST4Q8NCG5 386 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 OR1L1Q8NH94 360 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 LPAR5Q9H1C0 372 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 AURKAIP1Q9NWT8 199 aaPredicted RBP11.21□□□□□ -0.61
CLN3-235ENST00000568497 ETAA1Q9NY74 926 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 CALYQ9NYX4 217 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 STUB1Q9UNE7 303 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 SESN1Q9Y6P5 492 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 V9GY05 133 aa11.21□□□□□ -0.61
CLN3-235ENST00000568497 TENM3Q9P273 2699 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 IGHV2-26A0A0B4J1V2 119 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 MT-ND4P03905 459 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 CGB3P0DN86 165 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 CGB7P0DN87 165 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 RCC1P18754 421 aaPredicted RBP11.2□□□□□ -0.62
CLN3-235ENST00000568497 MYL9P24844 172 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 PSMA1P25786 263 aaKnown RBP11.2□□□□□ -0.62
CLN3-235ENST00000568497 ERP29P30040 261 aaKnown RBP11.2□□□□□ -0.62
CLN3-235ENST00000568497 SDC2P34741 201 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 RPS27AP62979 156 aaKnown RBP11.2□□□□□ -0.62
CLN3-235ENST00000568497 DIAPH2-AS1Q14236 149 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 RBM39Q14498 530 aaKnown RBP11.2□□□□□ -0.62
CLN3-235ENST00000568497 SSX2Q16385 188 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 C11orf91Q3C1V1 193 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 NCR3LG1Q68D85 454 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 C1orf122Q6ZSJ8 110 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 DTX3Q8N9I9 347 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 OR10V1Q8NGI7 309 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 OR6M1Q8NGM8 313 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 FCGR1BQ92637 280 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 FAM3DQ96BQ1 224 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 TMEM59Q9BXS4 323 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 TMEM133Q9H2Q1 129 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 RHOFQ9HBH0 211 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 NECAP2Q9NVZ3 263 aa11.2□□□□□ -0.62
CLN3-235ENST00000568497 RCC2Q9P258 522 aaKnown RBP11.2□□□□□ -0.62
CLN3-235ENST00000568497 UBE2J1Q9Y385 318 aaPredicted RBP11.2□□□□□ -0.62
CLN3-235ENST00000568497 A0A1W2PPH5 198 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 TMEM30CPA0ZSE6 113 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 ODF3BA8MYP8 253 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 H3BUX3 64 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 AIPO00170 330 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 SLC31A2O15432 143 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 ZNF780AO75290 641 aaPredicted RBP11.19□□□□□ -0.62
CLN3-235ENST00000568497 PAHP00439 452 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 CSN2P05814 226 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 CD37P11049 281 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 SNRPBP14678 240 aaKnown RBP11.19□□□□□ -0.62
CLN3-235ENST00000568497 ARSBP15848 533 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 CHATP28329 748 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 BLVRBP30043 206 aaPredicted RBP11.19□□□□□ -0.62
CLN3-235ENST00000568497 VEGFCP49767 419 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 GUCA2AQ02747 115 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 GNMTQ14749 295 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 MPV17LQ2QL34 196 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 CCBE1Q6UXH8 406 aaPredicted RBP11.19□□□□□ -0.62
CLN3-235ENST00000568497 ZNF497Q6ZNH5 498 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 CDH26Q8IXH8 852 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 ABHD12Q8N2K0 398 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 NDNFQ8TB73 568 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 SETD6Q8TBK2 473 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 THRSPQ92748 146 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 CORO2AQ92828 525 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 YIPF6Q96EC8 236 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 KIRREL1Q96J84 757 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 WWC2-AS2Q96NR7 200 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 SSX3Q99909 188 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 BARHL1Q9BZE3 327 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 NAA50Q9GZZ1 169 aaKnown RBP11.19□□□□□ -0.62
CLN3-235ENST00000568497 HEXA-AS1Q9H8Q6 139 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 IDI2-AS1Q9NZ38 188 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 ELF5Q9UKW6 265 aaPredicted RBP11.19□□□□□ -0.62
CLN3-235ENST00000568497 SSR3Q9UNL2 185 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 POMT1Q9Y6A1 747 aa11.19□□□□□ -0.62
CLN3-235ENST00000568497 A0A075B6Q4 140 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 A0A087WXM4 84 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 KBTBD11-OT1A0A1B0GTJ5 212 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 C12orf77C9JDV5 145 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 MCRIP1C9JLW8 97 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 C15orf65H3BRN8 121 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 GPR137BO60478 399 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 PDCD6O75340 191 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 TNFAIP8O95379 198 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 BPNT1O95861 308 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 RAB3BP20337 219 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 IER3P46695 156 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 BPIFB3P59826 476 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 GPR176Q14439 515 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 OXLD1Q5BKU9 147 aa11.18□□□□□ -0.62
CLN3-235ENST00000568497 PLAC9Q5JTB6 97 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms