RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 BLOC1S6Q9UL45 172 aa15.04■□□□□ -0
CLN3-227ENST00000567495 SIGLEC9Q9Y336 463 aa15.04■□□□□ -0
CLN3-227ENST00000567495 PKD1L1Q8TDX9 2849 aa15.04■□□□□ -0
CLN3-227ENST00000567495 TRRAPQ9Y4A5 3859 aa15.04■□□□□ -0
CLN3-227ENST00000567495 A0A1W2PP11 408 aa15.03■□□□□ -0
CLN3-227ENST00000567495 FAM172BPA6NC97 362 aa15.03■□□□□ -0
CLN3-227ENST00000567495 J3QR06 171 aa15.03■□□□□ -0
CLN3-227ENST00000567495 ORC5O43913 435 aa15.03■□□□□ -0
CLN3-227ENST00000567495 CRTAPO75718 401 aaPredicted RBP15.03■□□□□ -0
CLN3-227ENST00000567495 MT-ND4P03905 459 aa15.03■□□□□ -0
CLN3-227ENST00000567495 MGMTP16455 207 aa15.03■□□□□ -0
CLN3-227ENST00000567495 PSMA1P25786 263 aaKnown RBP15.03■□□□□ -0
CLN3-227ENST00000567495 MADCAM1Q13477 382 aa15.03■□□□□ -0
CLN3-227ENST00000567495 TPBGQ13641 420 aa15.03■□□□□ -0
CLN3-227ENST00000567495 C2orf68Q2NKX9 166 aa15.03■□□□□ -0
CLN3-227ENST00000567495 HSD17B12Q53GQ0 312 aa15.03■□□□□ -0
CLN3-227ENST00000567495 CEACAM19Q7Z692 300 aa15.03■□□□□ -0
CLN3-227ENST00000567495 RFESDQ8TAC1 157 aa15.03■□□□□ -0
CLN3-227ENST00000567495 RPEQ96AT9 228 aa15.03■□□□□ -0
CLN3-227ENST00000567495 SELENOIQ9C0D9 397 aa15.03■□□□□ -0
CLN3-227ENST00000567495 MMP27Q9H306 513 aa15.03■□□□□ -0
CLN3-227ENST00000567495 ZNF702PQ9H963 129 aa15.03■□□□□ -0
CLN3-227ENST00000567495 LIN7BQ9HAP6 207 aa15.03■□□□□ -0
CLN3-227ENST00000567495 AIPO00170 330 aa15.02■□□□□ -0
CLN3-227ENST00000567495 SC5DO75845 299 aa15.02■□□□□ -0
CLN3-227ENST00000567495 SRMP19623 302 aa15.02■□□□□ -0
CLN3-227ENST00000567495 FUT3P21217 361 aa15.02■□□□□ -0
CLN3-227ENST00000567495 SSTR5P35346 364 aa15.02■□□□□ -0
CLN3-227ENST00000567495 TMEM30BQ3MIR4 351 aa15.02■□□□□ -0
CLN3-227ENST00000567495 RBM48Q5RL73 367 aaKnown RBP15.02■□□□□ -0
CLN3-227ENST00000567495 LIPKQ5VXJ0 399 aa15.02■□□□□ -0
CLN3-227ENST00000567495 RAB12Q6IQ22 244 aa15.02■□□□□ -0
CLN3-227ENST00000567495 KLHDC1Q8N7A1 406 aa15.02■□□□□ -0
CLN3-227ENST00000567495 SGCDQ92629 289 aa15.02■□□□□ -0
CLN3-227ENST00000567495 Q96M66 194 aa15.02■□□□□ -0
CLN3-227ENST00000567495 CCDC90BQ9GZT6 254 aa15.02■□□□□ -0
CLN3-227ENST00000567495 BANF2Q9H503 90 aa15.02■□□□□ -0
CLN3-227ENST00000567495 PSG11Q9UQ72 335 aa15.02■□□□□ -0
CLN3-227ENST00000567495 PEX16Q9Y5Y5 336 aa15.02■□□□□ -0
CLN3-227ENST00000567495 WNK1Q9H4A3 2382 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 M0QZK8 103 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 UCHL1P09936 223 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 FAM106CPP0CH98 169 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 JUNBP17275 347 aaPredicted RBP15.01□□□□□ -0.01
CLN3-227ENST00000567495 RANBP1P43487 201 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 MLLT11Q13015 90 aaPredicted RBP15.01□□□□□ -0.01
CLN3-227ENST00000567495 INSL4Q14641 139 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 Q3ZCU0 254 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 C1orf100Q5SVJ3 147 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 C6orf183Q5T699 404 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 TRAT1Q6PIZ9 186 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 LRRTM1Q86UE6 522 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 THNSL2Q86YJ6 484 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 C8orf31Q8N9H6 132 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 TMEM104Q8NE00 496 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 CFHR4Q92496 578 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 TOMM40LQ969M1 308 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 ARL11Q969Q4 196 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 ETAA1Q9NY74 926 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 RAB26Q9ULW5 256 aa15.01□□□□□ -0.01
CLN3-227ENST00000567495 C15orf65H3BRN8 121 aa15□□□□□ -0.01
CLN3-227ENST00000567495 SPINT2O43291 252 aa15□□□□□ -0.01
CLN3-227ENST00000567495 PEX14O75381 377 aa15□□□□□ -0.01
CLN3-227ENST00000567495 ARL6IP5O75915 188 aa15□□□□□ -0.01
CLN3-227ENST00000567495 OR2F2O95006 317 aa15□□□□□ -0.01
CLN3-227ENST00000567495 HSMCR30P0CW71 290 aa15□□□□□ -0.01
CLN3-227ENST00000567495 CD37P11049 281 aa15□□□□□ -0.01
CLN3-227ENST00000567495 RAB7AP51149 207 aa15□□□□□ -0.01
CLN3-227ENST00000567495 GP2P55259 537 aaKnown RBP15□□□□□ -0.01
CLN3-227ENST00000567495 FAM27D1Q5T7N8 215 aa15□□□□□ -0.01
CLN3-227ENST00000567495 OR8H3Q8N146 312 aa15□□□□□ -0.01
CLN3-227ENST00000567495 GAPTQ8N292 157 aa15□□□□□ -0.01
CLN3-227ENST00000567495 OR10X1Q8NGY0 326 aa15□□□□□ -0.01
CLN3-227ENST00000567495 KCNG3Q8TAE7 436 aa15□□□□□ -0.01
CLN3-227ENST00000567495 TMEM203Q969S6 136 aa15□□□□□ -0.01
CLN3-227ENST00000567495 SERTAD4Q9NUC0 356 aa15□□□□□ -0.01
CLN3-227ENST00000567495 TRAPPC2LQ9UL33 140 aa15□□□□□ -0.01
CLN3-227ENST00000567495 TRAV39A0A0B4J263 110 aa14.99□□□□□ -0.01
CLN3-227ENST00000567495 PDCD6O75340 191 aa14.99□□□□□ -0.01
CLN3-227ENST00000567495 VSIG10L2P0DP72 767 aa14.99□□□□□ -0.01
CLN3-227ENST00000567495 CPEP16870 476 aa14.99□□□□□ -0.01
CLN3-227ENST00000567495 LTC4SQ16873 150 aa14.99□□□□□ -0.01
CLN3-227ENST00000567495 ARSJQ5FYB0 599 aaPredicted RBP14.99□□□□□ -0.01
CLN3-227ENST00000567495 ZNF554Q86TJ5 538 aa14.99□□□□□ -0.01
CLN3-227ENST00000567495 CCDC107Q8WV48 283 aa14.99□□□□□ -0.01
CLN3-227ENST00000567495 CNBD2Q96M20 576 aa14.99□□□□□ -0.01
CLN3-227ENST00000567495 RBM14Q96PK6 669 aaKnown RBP14.99□□□□□ -0.01
CLN3-227ENST00000567495 MGLLQ99685 303 aa14.99□□□□□ -0.01
CLN3-227ENST00000567495 SDCBPO00560 298 aaPredicted RBP14.98□□□□□ -0.01
CLN3-227ENST00000567495 CSF1P09603 554 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 HTR2CP28335 458 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 BLCAPP62952 87 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 TBCEQ15813 527 aaPredicted RBP14.98□□□□□ -0.01
CLN3-227ENST00000567495 UTF1Q5T230 341 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 SYT6Q5T7P8 510 aaPredicted RBP14.98□□□□□ -0.01
CLN3-227ENST00000567495 LINC00311Q8N616 119 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 OR6M1Q8NGM8 313 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 LEAP2Q969E1 77 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 FAM46BQ96A09 425 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 NEDD4LQ96PU5 975 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms