RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 GLAP06280 429 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 RCC1P18754 421 aaPredicted RBP15.91■□□□□ 0.14
CLN3-225ENST00000566824 LTC4SQ16873 150 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 IDNKQ5T6J7 187 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 GPR141Q7Z602 305 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 ZDHHC22Q8N966 263 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 MRPL30Q8TCC3 161 aaKnown RBP15.91■□□□□ 0.14
CLN3-225ENST00000566824 DUX5Q96PT3 197 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 TMEM133Q9H2Q1 129 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 GAL3ST2Q9H3Q3 398 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 HEXA-AS1Q9H8Q6 139 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 AK3Q9UIJ7 227 aa15.91■□□□□ 0.14
CLN3-225ENST00000566824 ODF3BA8MYP8 253 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 TCF21O43680 179 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 GABARAPO95166 117 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 RAB6AP20340 208 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 SERPINB10P48595 397 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 GUCA2AQ02747 115 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 LHFPL4Q7Z7J7 247 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 LEAP2Q969E1 77 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 KIRREL1Q96J84 757 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 PECRQ9BY49 303 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 LINC00574Q9H8X3 128 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 ZNF286AQ9HBT8 521 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 ZNRD1Q9P1U0 126 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 KCNK7Q9Y2U2 307 aa15.9■□□□□ 0.14
CLN3-225ENST00000566824 IGHV2-26A0A0B4J1V2 119 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 MEIOCA2RUB1 952 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 NPIPB11E5RHQ5 1161 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 RAB27BO00194 218 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 IL1AP01583 271 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 IGHV3-7P01780 117 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 BPIFB3P59826 476 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 HILS1P60008 231 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 SCGB2A2Q13296 93 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 DYNAPQ8N1N2 210 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 ZNF565Q8N9K5 539 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 OR11H6Q8NGC7 330 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 OR56B1Q8NGI3 324 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 ZNF418Q8TF45 676 aaPredicted RBP15.89■□□□□ 0.13
CLN3-225ENST00000566824 PRDM13Q9H4Q3 707 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 PLEKHJ1Q9NW61 149 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 IDI2-AS1Q9NZ38 188 aa15.89■□□□□ 0.13
CLN3-225ENST00000566824 COL6A5A8TX70 2615 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 C12orf77C9JDV5 145 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 NFYBP25208 207 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 Q6ZTK2 550 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 USP43Q70EL4 1123 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 OR13D1Q8NGV5 346 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 OR10R2Q8NGX6 335 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 OR1L1Q8NH94 360 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 NDNFQ8TB73 568 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 ARL11Q969Q4 196 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 PTX4Q96A99 478 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 SLC25A38Q96DW6 304 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 ATG5Q9H1Y0 275 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 ELF5Q9UKW6 265 aaPredicted RBP15.88■□□□□ 0.13
CLN3-225ENST00000566824 TRAPPC2LQ9UL33 140 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 HSF4Q9ULV5 492 aa15.88■□□□□ 0.13
CLN3-225ENST00000566824 DNAJC9-AS1A6NH13 148 aa15.87■□□□□ 0.13
CLN3-225ENST00000566824 NAPSAO96009 420 aa15.87■□□□□ 0.13
CLN3-225ENST00000566824 ARG1P05089 322 aa15.87■□□□□ 0.13
CLN3-225ENST00000566824 MELTFP08582 738 aa15.87■□□□□ 0.13
CLN3-225ENST00000566824 RPL5P46777 297 aaKnown RBP15.87■□□□□ 0.13
CLN3-225ENST00000566824 DYNC1I2Q13409 638 aaKnown RBP15.87■□□□□ 0.13
CLN3-225ENST00000566824 ZNF626Q68DY1 528 aa15.87■□□□□ 0.13
CLN3-225ENST00000566824 CLVS1Q8IUQ0 354 aaPredicted RBP15.87■□□□□ 0.13
CLN3-225ENST00000566824 ZMAT3Q9HA38 289 aaKnown RBP15.87■□□□□ 0.13
CLN3-225ENST00000566824 MBNL3Q9NUK0 354 aaKnown RBP15.87■□□□□ 0.13
CLN3-225ENST00000566824 A0A075B6Q4 140 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 IGHV3-43A0A0B4J1X8 118 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 H3BUI4 141 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 HOXA3O43365 443 aaPredicted RBP15.86■□□□□ 0.13
CLN3-225ENST00000566824 CA11O75493 328 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 IGHV3-43DP0DP04 118 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 GNB3P16520 340 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 GZMHP20718 246 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 BAMBIQ13145 260 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 MIDNQ504T8 468 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 Q6YL49 198 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 ABHD12Q8N2K0 398 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 SLC25A46Q96AG3 418 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 RAB3CQ96E17 227 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 CLEC7AQ9BXN2 247 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 TNFRSF19Q9NS68 423 aa15.86■□□□□ 0.13
CLN3-225ENST00000566824 MFNGO00587 321 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 ORC5O43913 435 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 IGHV4-59P01825 116 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 HBZP02008 142 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 CD34P28906 385 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 SPCS2Q15005 226 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 SLC9A3R2Q15599 337 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 KRTAP24-1Q3LI83 254 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 ZNF880Q6PDB4 577 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 PRR18Q8N4B5 295 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 OR4P4Q8NGL7 312 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 ZDHHC16Q969W1 377 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 TAF9BQ9HBM6 251 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 RHBDL2Q9NX52 303 aa15.85■□□□□ 0.13
CLN3-225ENST00000566824 FAM96BQ9Y3D0 163 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms