RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 EIF2S3LQ2VIR3 472 aaKnown RBP5.31□□□□□ -1.56
CLN3-223ENST00000566472 ATP1A1-AS1Q5TC04 95 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 CTRB2Q6GPI1 263 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 DPPA3Q6W0C5 159 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 ZNF497Q6ZNH5 498 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 WDR86Q86TI4 376 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 BATF2Q8N1L9 274 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 TMEM252Q8N6L7 170 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 FAM169BQ8N8A8 192 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 SLC25A40Q8TBP6 338 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 RDH5Q92781 318 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 GNPNAT1Q96EK6 184 aaPredicted RBP5.31□□□□□ -1.56
CLN3-223ENST00000566472 RAB40CQ96S21 281 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 PBDC1Q9BVG4 233 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 SMIM3Q9BZL3 60 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 TLNRD1Q9H1K6 362 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 CXXC4Q9H2H0 198 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 HIPK2Q9H2X6 1198 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 SEBOXQ9HB31 216 aaPredicted RBP5.31□□□□□ -1.56
CLN3-223ENST00000566472 WFDC1Q9HC57 220 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 C19orf12Q9NSK7 152 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 MBNL3Q9NUK0 354 aaKnown RBP5.31□□□□□ -1.56
CLN3-223ENST00000566472 LIN7CQ9NUP9 197 aaKnown RBP5.31□□□□□ -1.56
CLN3-223ENST00000566472 PLA2G2EQ9NZK7 142 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 TAAR3PQ9P1P4 343 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 A0A1B0GWJ7 208 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 IGSF23A1L1A6 192 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 FAM24AA6NFZ4 105 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 FAM74A7A6NL05 159 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 AHRRA9YTQ3 701 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 C1QTNF9BB2RNN3 333 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 FAM90A26D6RGX4 464 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 HS3ST1O14792 307 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 RHBDL1O75783 438 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 NXPH2O95156 264 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 IGLV1-44P01699 117 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 SERPINE2P07093 398 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 SFTA3P0C7M3 94 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 SNCAP37840 140 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 TAS2R30P59541 319 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 POLR2GP62487 172 aaKnown RBP eCLIP5.3□□□□□ -1.56
CLN3-223ENST00000566472 RPL23AP62750 156 aaKnown RBP5.3□□□□□ -1.56
CLN3-223ENST00000566472 SRSF3P84103 164 aaKnown RBP5.3□□□□□ -1.56
CLN3-223ENST00000566472 PAX5Q02548 391 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 ZNF154Q13106 437 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 FAM74A3Q4VXF1 159 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 MIDNQ504T8 468 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 SLC35E4Q6ICL7 350 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 TRAT1Q6PIZ9 186 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 TCTEX1D1Q8N7M0 179 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 BOLLQ8N9W6 283 aaKnown RBP5.3□□□□□ -1.56
CLN3-223ENST00000566472 SCCPDHQ8NBX0 429 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 DEFB124Q8NES8 71 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 FDCSPQ8NFU4 85 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 OR1J1Q8NGS3 322 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 PRR7Q8TB68 274 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 PLPPR1Q8TBJ4 325 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 BSCL2Q96G97 398 aaPredicted RBP5.3□□□□□ -1.56
CLN3-223ENST00000566472 ZNF488Q96MN9 340 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 TRIB1Q96RU8 372 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 ATP5SQ99766 215 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 AIFM2Q9BRQ8 373 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 BCL2L14Q9BZR8 327 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 OR2J1Q9GZK6 312 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 KCNIP1Q9NZI2 227 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 WSB1Q9Y6I7 421 aa5.3□□□□□ -1.56
CLN3-223ENST00000566472 SDK1Q7Z5N4 2213 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 MBD3L4A6NDZ8 208 aaPredicted RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 MBD3L3A6NE82 208 aaPredicted RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 OOEPA6NGQ2 149 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 MBD3L5A6NJ08 208 aaPredicted RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 H7C2Y5 167 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 IFNL4K9M1U5 179 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 SIRPB1O00241 398 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 HSPB6O14558 160 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 NKX2-8O15522 239 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 SSSCA1O60232 199 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 SCAF4O95104 1147 aaKnown RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 HAND1O96004 215 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 HBE1P02100 147 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 CELA3BP08861 270 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 OR8U8P0C7N1 319 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 OR8U9P0C7N5 309 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 GLI4P10075 376 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 ATP6V0CP27449 155 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 CD80P33681 288 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 KIR2DL2P43627 348 aaPredicted RBP5.29□□□□□ -1.56
CLN3-223ENST00000566472 NPBWR1P48145 328 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 SULT1A1P50225 295 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 CCL11P51671 97 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 AKR1C2P52895 323 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 RAB2AP61019 212 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 PMP22Q01453 160 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 NHLH2Q02577 135 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 AKR1C1Q04828 323 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 ZNF616Q08AN1 781 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 PSG7Q13046 419 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 P2RY6Q15077 328 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 TESK1Q15569 626 aa5.29□□□□□ -1.56
CLN3-223ENST00000566472 GUK1Q16774 197 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms