RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 MRGPRDQ8TDS7 321 aa17■□□□□ 0.31
CLN3-212ENST00000564574 GPX8Q8TED1 209 aa17■□□□□ 0.31
CLN3-212ENST00000564574 CCDC107Q8WV48 283 aa17■□□□□ 0.31
CLN3-212ENST00000564574 S100ZQ8WXG8 99 aa17■□□□□ 0.31
CLN3-212ENST00000564574 TMEM186Q96B77 213 aa17■□□□□ 0.31
CLN3-212ENST00000564574 OCSTAMPQ9BR26 566 aa17■□□□□ 0.31
CLN3-212ENST00000564574 Q9N2K0 584 aa17■□□□□ 0.31
CLN3-212ENST00000564574 INSIG2Q9Y5U4 225 aa17■□□□□ 0.31
CLN3-212ENST00000564574 ITPR3Q14573 2671 aa17■□□□□ 0.31
CLN3-212ENST00000564574 VPS13CQ709C8 3753 aa17■□□□□ 0.31
CLN3-212ENST00000564574 MED13LQ71F56 2210 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 M0R1W7 72 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 RBP4P02753 201 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 ZNF728P0DKX0 622 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 CGB3P0DN86 165 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 CGB7P0DN87 165 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 PTHLHP12272 177 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 Q6ZS49 121 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 C18orf12Q96KH6 178 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 MMP26Q9NRE1 261 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 KPTNQ9Y664 436 aa16.99■□□□□ 0.31
CLN3-212ENST00000564574 TEP1Q99973 2627 aaKnown RBP16.99■□□□□ 0.31
CLN3-212ENST00000564574 hCG_1809904A0A1W2PP81 198 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 A0A1W2PPE2 198 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 A0A1W2PR64 198 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 A0A1W2PRV1 198 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 GABARAPH6UMI1 98 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 TGFAP01135 160 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 RCC1P18754 421 aaPredicted RBP16.98■□□□□ 0.31
CLN3-212ENST00000564574 KIR2DS4P43632 304 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 GUCA2AQ02747 115 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 KIR2DS1Q14954 304 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 HMGN3Q15651 99 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 C1orf122Q6ZSJ8 110 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 FCAMRQ8WWV6 532 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 LINC00574Q9H8X3 128 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 ZNF286AQ9HBT8 521 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 HIF1ANQ9NWT6 349 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 CALYQ9NYX4 217 aa16.98■□□□□ 0.31
CLN3-212ENST00000564574 TRAV39A0A0B4J263 110 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 KBTBD11-OT1A0A1B0GTJ5 212 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 MEIOCA2RUB1 952 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 C17orf98A8MV24 154 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 GSTZ1O43708 216 aaPredicted RBP16.97■□□□□ 0.31
CLN3-212ENST00000564574 FOSL1P15407 271 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 CCL3L1P16619 93 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 DLX6P56179 175 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 HLA-DRB3P79483 266 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 SSBP1Q04837 148 aaKnown RBP16.97■□□□□ 0.31
CLN3-212ENST00000564574 TMEM30BQ3MIR4 351 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 DCAF12L2Q5VW00 463 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 Q6ZPA2 131 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 HOGA1Q86XE5 327 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 OR10A7Q8NGE5 316 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 SMIM4Q8WVI0 70 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 GCDHQ92947 438 aaPredicted RBP16.97■□□□□ 0.31
CLN3-212ENST00000564574 TAF9BQ9HBM6 251 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 AKIP1Q9NQ31 210 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 IFT46Q9NQC8 304 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 ONECUT1Q9UBC0 465 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 ANAPC10Q9UM13 185 aa16.97■□□□□ 0.31
CLN3-212ENST00000564574 TRDCB7Z8K6 153 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 C12orf77C9JDV5 145 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 NPIPB11E5RHQ5 1161 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 C15orf65H3BRN8 121 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 J3QLI3 93 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 SPINT2O43291 252 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 ZNF16P17020 682 aaPredicted RBP16.96■□□□□ 0.31
CLN3-212ENST00000564574 PAX8Q06710 450 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 ZNF79Q15937 498 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 C17orf58Q2M2W7 97 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 PYDC2Q56P42 97 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 ARL11Q969Q4 196 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 TMUB1Q9BVT8 246 aa16.96■□□□□ 0.31
CLN3-212ENST00000564574 ZNF230Q9UIE0 474 aaPredicted RBP16.96■□□□□ 0.31
CLN3-212ENST00000564574 MEX3AA1L020 520 aaKnown RBP16.95■□□□□ 0.3
CLN3-212ENST00000564574 CD5LO43866 347 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 RBBP9O75884 186 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 INHBBP09529 407 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 NAT1P18440 290 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 RCVRNP35243 200 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 SSTR5P35346 364 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 ACTBP60709 375 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 ARF6P62330 175 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 ACTG1P63261 375 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 METTL11BQ5VVY1 283 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 HEPN1Q6WQI6 88 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 MFSD4AQ8N468 514 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 GDPD1Q8N9F7 314 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 OR52I2Q8NH67 350 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 ST6GALNAC5Q9BVH7 336 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 SRRQ9GZT4 340 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 IDI2-AS1Q9NZ38 188 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 MTFP1Q9UDX5 166 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 F8P00451 2351 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 WNK2Q9Y3S1 2297 aa16.95■□□□□ 0.3
CLN3-212ENST00000564574 DIRAS3O95661 229 aa16.94■□□□□ 0.3
CLN3-212ENST00000564574 HBZP02008 142 aa16.94■□□□□ 0.3
CLN3-212ENST00000564574 CD99P14209 185 aa16.94■□□□□ 0.3
CLN3-212ENST00000564574 ERVFRD-1P60508 538 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms