RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ADORA1P30542 326 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SOX3P41225 446 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 RPS10P46783 165 aaKnown RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 GSK3BP49841 420 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 GNG4P50150 75 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SULT1A1P50225 295 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 HMGCS2P54868 508 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 TAS2R43P59537 309 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 PLP1P60201 277 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 KRTAP10-12P60413 245 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 UBE2NP61088 152 aaKnown RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 SNRPGP62308 76 aaKnown RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 SRSF9Q13242 221 aaKnown RBP eCLIP2.82□□□□□ -1.96
VPS35-203ENST00000562420 ZNF235Q14590 738 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ACSM3Q53FZ2 586 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SOHLH1Q5JUK2 328 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SPANXN3Q5MJ09 141 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 GLT8D1Q68CQ7 371 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ZNF776Q68DI1 518 aaPredicted RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 RTL6Q6ICC9 239 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 OR2T2Q6IF00 324 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 FAHD1Q6P587 224 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 CNIH2Q6PI25 160 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 KCNIP4Q6PIL6 250 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 AGTRAPQ6RW13 159 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 NHLRC1Q6VVB1 395 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ZNF705AQ6ZN79 300 aaPredicted RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 MOB1BQ7L9L4 216 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 OLIG3Q7RTU3 272 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 GLT6D1Q7Z4J2 308 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SLC35E3Q7Z769 313 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 LRP11Q86VZ4 500 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 APRG1Q8IVJ8 170 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 BOD1L2Q8IYS8 172 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 RNF175Q8N4F7 328 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 COX18Q8N8Q8 333 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ZNF439Q8NDP4 499 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 PRSS33Q8NF86 280 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 NOXO1Q8NFA2 376 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SLC26A10Q8NG04 563 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 OR52L1Q8NGH7 329 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 OR5A1Q8NGJ0 315 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 OR10G4Q8NGN3 311 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 OCC1Q8TAD7 63 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SFXN5Q8TD22 340 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 APOBEC4Q8WW27 367 aaKnown RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 RERGQ96A58 199 aaPredicted RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 NTNG2Q96CW9 530 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 MS4A6EQ96DS6 147 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SLAMF6Q96DU3 332 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 IMP4Q96G21 291 aaKnown RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 TEX37Q96LM6 180 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 TSPAN32Q96QS1 320 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 LYSMD1Q96S90 227 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 NKX3-1Q99801 234 aaPredicted RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 CABLES2Q9BTV7 478 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 NUDT9Q9BW91 350 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 FAIM2Q9BWQ8 316 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ZNF471Q9BX82 626 aaPredicted RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 SAMD10Q9BYL1 202 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 PRRG4Q9BZD6 226 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 LINC00470Q9BZP3 86 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SELENOIQ9C0D9 397 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 STRADBQ9C0K7 418 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 OR11A1Q9GZK7 315 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SLC25A31Q9H0C2 315 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SIRPDQ9H106 197 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SLC25A51Q9H1U9 297 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ATG5Q9H1Y0 275 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 MFSD1Q9H3U5 465 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 RERGLQ9H628 205 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 LRTM1Q9HBL6 345 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 NMRAL1Q9HBL8 299 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SLC7A10Q9NS82 523 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ABRACLQ9P1F3 81 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 MARCOQ9UEW3 520 aaPredicted RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 ZNF107Q9UII5 783 aaPredicted RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 RAB22AQ9UL26 194 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 EMCNQ9ULC0 261 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 NEU3Q9UQ49 428 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 LAMTOR2Q9Y2Q5 125 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 RPL36Q9Y3U8 105 aaKnown RBP2.82□□□□□ -1.96
VPS35-203ENST00000562420 WIPI2Q9Y4P8 454 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 SNX10Q9Y5X0 201 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 STYXL1Q9Y6J8 313 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 ROBO1Q9Y6N7 1651 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 STRCP1A6NGW2 1772 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 COL18A1P39060 1754 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 RGPD5Q99666 1765 aa2.82□□□□□ -1.96
VPS35-203ENST00000562420 OBSCNQ5VST9 7968 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TRBV6-7A0A0A0MS04 114 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TRAV19A0A0A6YYK7 116 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TRBV5-5A0A0J9YX44 114 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 A0A0J9YY10 115 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 hCG_38984A0A1B0GV85 526 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 A0A1B0GX78 115 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 G3V2L1 256 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 H0Y980 276 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 SDHDO14521 159 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms