RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 RNF224P0DH78 156 aa17.77■□□□□ 0.44
CLN3-209ENST00000561689 SELLP14151 372 aa17.77■□□□□ 0.44
CLN3-209ENST00000561689 KCNJ3P48549 501 aa17.77■□□□□ 0.44
CLN3-209ENST00000561689 GZMKP49863 264 aa17.77■□□□□ 0.44
CLN3-209ENST00000561689 STUMQ69YW2 141 aa17.77■□□□□ 0.44
CLN3-209ENST00000561689 DUX4L9Q6RFH8 374 aaPredicted RBP17.77■□□□□ 0.44
CLN3-209ENST00000561689 OR4A4PQ8NGN8 299 aa17.77■□□□□ 0.44
CLN3-209ENST00000561689 TMEM230Q96A57 120 aa17.77■□□□□ 0.44
CLN3-209ENST00000561689 TMEM106BQ9NUM4 274 aa17.77■□□□□ 0.44
CLN3-209ENST00000561689 DUX4Q9UBX2 424 aa17.77■□□□□ 0.44
CLN3-209ENST00000561689 A0A1W2PPR1 153 aa17.77■□□□□ 0.43
CLN3-209ENST00000561689 TMEM178BH3BS89 294 aa17.77■□□□□ 0.43
CLN3-209ENST00000561689 C1QBP02746 253 aa17.77■□□□□ 0.43
CLN3-209ENST00000561689 IGFBP2P18065 325 aa17.77■□□□□ 0.43
CLN3-209ENST00000561689 VAMP1P23763 118 aa17.77■□□□□ 0.43
CLN3-209ENST00000561689 ZBTB25P24278 435 aa17.77■□□□□ 0.43
CLN3-209ENST00000561689 SURF2Q15527 256 aaPredicted RBP17.77■□□□□ 0.43
CLN3-209ENST00000561689 SNX22Q96L94 193 aa17.77■□□□□ 0.43
CLN3-209ENST00000561689 FXYD6Q9H0Q3 95 aa17.77■□□□□ 0.43
CLN3-209ENST00000561689 SEBOXQ9HB31 216 aaPredicted RBP17.77■□□□□ 0.43
CLN3-209ENST00000561689 TAF9BQ9HBM6 251 aa17.77■□□□□ 0.43
CLN3-209ENST00000561689 COL12A1Q99715 3063 aa17.76■□□□□ 0.43
CLN3-209ENST00000561689 MYO18BQ8IUG5 2567 aa17.76■□□□□ 0.43
CLN3-209ENST00000561689 POM121CA8CG34 1229 aa17.76■□□□□ 0.43
CLN3-209ENST00000561689 CTXN2P0C2S0 81 aa17.76■□□□□ 0.43
CLN3-209ENST00000561689 MUC1P15941 1255 aaPredicted RBP17.76■□□□□ 0.43
CLN3-209ENST00000561689 TEX36Q5VZQ5 186 aa17.76■□□□□ 0.43
CLN3-209ENST00000561689 SLC7A5P1Q8MH63 180 aa17.76■□□□□ 0.43
CLN3-209ENST00000561689 CCL13Q99616 98 aa17.76■□□□□ 0.43
CLN3-209ENST00000561689 TMEM246Q9BRR3 403 aa17.76■□□□□ 0.43
CLN3-209ENST00000561689 DYSFO75923 2080 aa17.76■□□□□ 0.43
CLN3-209ENST00000561689 K7N7A8 449 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 PPYP01298 95 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 ZNF728P0DKX0 622 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 ECI1P42126 302 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 TAS2R31P59538 309 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 HERV-K104P61576 105 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 IL13RA1P78552 427 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 LYG2Q86SG7 212 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 TMEM185AQ8NFB2 350 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 MOB3AQ96BX8 217 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 C14orf166Q9Y224 244 aaKnown RBP17.75■□□□□ 0.43
CLN3-209ENST00000561689 ARFGEF3Q5TH69 2177 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 IGHV1-69-2A0A0G2JMI3 117 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 C9orf170A2RU37 121 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 FAM172BPA6NC97 362 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 CD8AP01732 235 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 SOD3P08294 240 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 C2orf68Q2NKX9 166 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 TMEM128Q5BJH2 165 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 FAHD2BQ6P2I3 314 aaPredicted RBP17.75■□□□□ 0.43
CLN3-209ENST00000561689 C1orf87Q8N0U7 546 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 PPP1R35Q8TAP8 253 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 MRGPRDQ8TDS7 321 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 CASTOR1Q8WTX7 329 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 SDSLQ96GA7 329 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 FAHD2AQ96GK7 314 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 FAM210AQ96ND0 272 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 DCTN5Q9BTE1 182 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 KCNIP1Q9NZI2 227 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 OR1A1Q9P1Q5 309 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 MGAT4CQ9UBM8 478 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 MGAT4AQ9UM21 535 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 PCDHB10Q9UN67 800 aa17.75■□□□□ 0.43
CLN3-209ENST00000561689 MGST3O14880 152 aa17.74■□□□□ 0.43
CLN3-209ENST00000561689 ERP29P30040 261 aaKnown RBP17.74■□□□□ 0.43
CLN3-209ENST00000561689 HMGN3Q15651 99 aa17.74■□□□□ 0.43
CLN3-209ENST00000561689 ZNF561Q8N587 486 aa17.74■□□□□ 0.43
CLN3-209ENST00000561689 C12orf45Q8N5I9 185 aaPredicted RBP17.74■□□□□ 0.43
CLN3-209ENST00000561689 FAM216BQ8N7L0 139 aa17.74■□□□□ 0.43
CLN3-209ENST00000561689 OR10J5Q8NHC4 309 aa17.74■□□□□ 0.43
CLN3-209ENST00000561689 GAFA1Q96PS6 74 aa17.74■□□□□ 0.43
CLN3-209ENST00000561689 CABLES2Q9BTV7 478 aa17.74■□□□□ 0.43
CLN3-209ENST00000561689 CBLN4Q9NTU7 201 aa17.74■□□□□ 0.43
CLN3-209ENST00000561689 USP9XQ93008 2570 aaPredicted RBP17.74■□□□□ 0.43
CLN3-209ENST00000561689 TRBV6-7A0A0A0MS04 114 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 C12orf77C9JDV5 145 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 LGALS8O00214 317 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 DIRAS3O95661 229 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 OR13A1Q8NGR1 328 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 ZFAND1Q8TCF1 268 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 PPIAL4EA0A075B759 164 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 PPIAL4DF5H284 164 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 LYNX1G3V0Z9 82 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 CTSDP07339 412 aaPredicted RBP17.73■□□□□ 0.43
CLN3-209ENST00000561689 PPIAL4FP0DN26 164 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 LYNX1P0DP58 116 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 PPOXP50336 477 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 EDDM3BP56851 147 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 LAMTOR1Q6IAA8 161 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 LIN54Q6MZP7 749 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 MEX3BQ6ZN04 569 aaKnown RBP17.73■□□□□ 0.43
CLN3-209ENST00000561689 ZNF788Q6ZQV5 615 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 OR2AK2Q8NG84 335 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 OR1L1Q8NH94 360 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 ZNF665Q9H7R5 613 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 PPIAL4AQ9Y536 164 aa17.73■□□□□ 0.43
CLN3-209ENST00000561689 SPTAN1Q13813 2472 aaKnown RBP17.73■□□□□ 0.43
CLN3-209ENST00000561689 TRAV38-1A0A0B4J264 116 aa17.72■□□□□ 0.43
CLN3-209ENST00000561689 TUSC2O75896 110 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms