RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 IL36GQ9NZH8 169 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.12□□□□□ -1.11
LDLR-214ENST00000560628 LINC00527Q9UJ94 153 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 MOB4Q9Y3A3 225 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 HSPE1-MOB4S4R3N1 261 aa8.12□□□□□ -1.11
LDLR-214ENST00000560628 PRKDCP78527 4128 aaKnown RBP8.12□□□□□ -1.11
LDLR-214ENST00000560628 IGHV3-43A0A0B4J1X8 118 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 IGHV3-72A0A0B4J1Y9 119 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 TRBV5-5A0A0J9YX44 114 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 PSMB11A5LHX3 300 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 M0QZK8 103 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 SDCBPO00560 298 aaPredicted RBP8.11□□□□□ -1.11
LDLR-214ENST00000560628 IGKV1D-33P01593 117 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 IGKV1-33P01594 117 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 PF4P02776 101 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 MT-ND4P03905 459 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 IGHV3-43DP0DP04 118 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 GTF2F2P13984 249 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 IGFBP3P17936 291 aaPredicted RBP8.11□□□□□ -1.11
LDLR-214ENST00000560628 RAB7AP51149 207 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 RPS11P62280 158 aaKnown RBP eCLIP8.11□□□□□ -1.11
LDLR-214ENST00000560628 ADARB1P78563 741 aaKnown RBP8.11□□□□□ -1.11
LDLR-214ENST00000560628 PAX5Q02548 391 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 ST3GAL4Q11206 333 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 MED21Q13503 144 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 NHLRC3Q5JS37 347 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 SLC16A12Q6ZSM3 486 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 REC114Q7Z4M0 266 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 MOB3BQ86TA1 216 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 JAGN1Q8N5M9 183 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 OR10A7Q8NGE5 316 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 MUL1Q969V5 352 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 NOL4LQ96MY1 436 aaPredicted RBP8.11□□□□□ -1.11
LDLR-214ENST00000560628 IFT22Q9H7X7 185 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 PAK1IP1Q9NWT1 392 aaPredicted RBP8.11□□□□□ -1.11
LDLR-214ENST00000560628 AURKAIP1Q9NWT8 199 aaPredicted RBP8.11□□□□□ -1.11
LDLR-214ENST00000560628 CKLFQ9UBR5 152 aa8.11□□□□□ -1.11
LDLR-214ENST00000560628 TRBV5-7A0A0A0MS05 114 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 C15orf65H3BRN8 121 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 CCRL2O00421 344 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 PIN1P1O15428 100 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 GPX5O75715 221 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 MAS1P04201 325 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 GAPDHP04406 335 aaKnown RBP8.1□□□□□ -1.11
LDLR-214ENST00000560628 GNAO1P09471 354 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 VHLP40337 213 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 LOXL3P58215 753 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 RCN1Q15293 331 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 MPV17LQ2QL34 196 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 Q499Y3 187 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 YIF1BQ5BJH7 314 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 LAIR2Q6ISS4 152 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 GLIPR1L1Q6UWM5 242 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 OR8H3Q8N146 312 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 C5orf56Q8N8D9 126 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 ZNF485Q8NCK3 441 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 SETD9Q8NE22 299 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 RBMXL1Q96E39 390 aaKnown RBP8.1□□□□□ -1.11
LDLR-214ENST00000560628 PGLYRP3Q96LB9 341 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 OR14A2Q96R54 314 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 BANF2Q9H503 90 aa8.1□□□□□ -1.11
LDLR-214ENST00000560628 MRPS28Q9Y2Q9 187 aaKnown RBP8.1□□□□□ -1.11
LDLR-214ENST00000560628 IGHV1-3A0A0C4DH29 117 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 EFCAB10A6NFE3 127 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 LINC01548A6NM66 108 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 NCBP2LA6PVI3 153 aaKnown RBP8.09□□□□□ -1.11
LDLR-214ENST00000560628 SERPINE3A8MV23 424 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 MCRIP1C9JLW8 97 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 AIPO00170 330 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 HSD17B6O14756 317 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 SLC31A2O15432 143 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 ZNF780AO75290 641 aaPredicted RBP8.09□□□□□ -1.11
LDLR-214ENST00000560628 MPIG6BO95866 241 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 CELP19835 753 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 DOC2BQ14184 412 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 GPR176Q14439 515 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 SYT6Q5T7P8 510 aaPredicted RBP8.09□□□□□ -1.11
LDLR-214ENST00000560628 RAB12Q6IQ22 244 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 ZNF497Q6ZNH5 498 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 C18orf65Q6ZTR6 163 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 LINC00596Q86U02 117 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 PRR18Q8N4B5 295 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 STX19Q8N4C7 294 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 PACRGLQ8N7B6 248 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 BPIFB6Q8NFQ5 453 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 OR4K15Q8NH41 348 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 CYYR1Q96J86 154 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 EAF1Q96JC9 268 aaPredicted RBP8.09□□□□□ -1.11
LDLR-214ENST00000560628 GFOD1Q9NXC2 390 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 ETAA1Q9NY74 926 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 TRAPPC2LQ9UL33 140 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 PEX16Q9Y5Y5 336 aa8.09□□□□□ -1.11
LDLR-214ENST00000560628 UBE2QL1A1L167 161 aa8.08□□□□□ -1.12
LDLR-214ENST00000560628 ZNF736B4DX44 427 aaPredicted RBP8.08□□□□□ -1.12
LDLR-214ENST00000560628 C12orf77C9JDV5 145 aa8.08□□□□□ -1.12
LDLR-214ENST00000560628 ORC5O43913 435 aa8.08□□□□□ -1.12
LDLR-214ENST00000560628 CAPGP40121 348 aa8.08□□□□□ -1.12
LDLR-214ENST00000560628 ZNF816Q0VGE8 651 aaPredicted RBP8.08□□□□□ -1.12
LDLR-214ENST00000560628 AWAT2Q6E213 333 aa8.08□□□□□ -1.12
LDLR-214ENST00000560628 AHSA2Q719I0 299 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms