RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 MMP23AO75900 390 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 SOX6P35712 828 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 PRAMEF5Q5TYX0 476 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 HEPN1Q6WQI6 88 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 Q6ZPA2 131 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 CCDC107Q8WV48 283 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 SESN1Q9Y6P5 492 aa17.73■□□□□ 0.43
SNX1-206ENST00000559389 SONP18583 2426 aaKnown RBP17.73■□□□□ 0.43
SNX1-206ENST00000559389 TRBV6-6A0A0A6YYG2 114 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 IGHV1-69DA0A0B4J2H0 117 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 SERPINE3A8MV23 424 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 NPIPB11E5RHQ5 1161 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 C15orf65H3BRN8 121 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 IGHV1-69P01742 117 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 FAM157CP0CG43 387 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 GNB3P16520 340 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 EPHA1P21709 976 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 CDK2P24941 298 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 GDNFP39905 211 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 GUCA2AQ02747 115 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 ARL6IP1Q15041 203 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 C6orf183Q5T699 404 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 TRAT1Q6PIZ9 186 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 HDHD3Q9BSH5 251 aaPredicted RBP17.72■□□□□ 0.43
SNX1-206ENST00000559389 RIMS4Q9H426 269 aaPredicted RBP17.72■□□□□ 0.43
SNX1-206ENST00000559389 ZMAT3Q9HA38 289 aaKnown RBP17.72■□□□□ 0.43
SNX1-206ENST00000559389 COMMD3Q9UBI1 195 aa17.72■□□□□ 0.43
SNX1-206ENST00000559389 ORC5O43913 435 aa17.71■□□□□ 0.43
SNX1-206ENST00000559389 RCC1P18754 421 aaPredicted RBP17.71■□□□□ 0.43
SNX1-206ENST00000559389 GZMHP20718 246 aa17.71■□□□□ 0.43
SNX1-206ENST00000559389 OMGP23515 440 aa17.71■□□□□ 0.43
SNX1-206ENST00000559389 RUSC1-AS1Q66K80 236 aa17.71■□□□□ 0.43
SNX1-206ENST00000559389 ZNF880Q6PDB4 577 aa17.71■□□□□ 0.43
SNX1-206ENST00000559389 MOB1BQ7L9L4 216 aa17.71■□□□□ 0.43
SNX1-206ENST00000559389 PHF21AQ96BD5 680 aa17.71■□□□□ 0.43
SNX1-206ENST00000559389 KIRREL1Q96J84 757 aa17.71■□□□□ 0.43
SNX1-206ENST00000559389 CMTM3Q96MX0 182 aa17.71■□□□□ 0.43
SNX1-206ENST00000559389 CMSS1Q9BQ75 279 aaKnown RBP17.71■□□□□ 0.43
SNX1-206ENST00000559389 HEXA-AS1Q9H8Q6 139 aa17.71■□□□□ 0.43
SNX1-206ENST00000559389 CHMP1AQ9HD42 196 aaPredicted RBP17.71■□□□□ 0.43
SNX1-206ENST00000559389 TEP1Q99973 2627 aaKnown RBP17.71■□□□□ 0.43
SNX1-206ENST00000559389 A0A075B6Q4 140 aa17.7■□□□□ 0.42
SNX1-206ENST00000559389 C12orf77C9JDV5 145 aa17.7■□□□□ 0.42
SNX1-206ENST00000559389 EIF4EP06730 217 aaKnown RBP17.7■□□□□ 0.42
SNX1-206ENST00000559389 COX7A1P24310 79 aa17.7■□□□□ 0.42
SNX1-206ENST00000559389 MZT2AQ6P582 158 aa17.7■□□□□ 0.42
SNX1-206ENST00000559389 C9orf139Q6ZV77 190 aa17.7■□□□□ 0.42
SNX1-206ENST00000559389 ZNF554Q86TJ5 538 aa17.7■□□□□ 0.42
SNX1-206ENST00000559389 PDZD9Q8IXQ8 264 aa17.7■□□□□ 0.42
SNX1-206ENST00000559389 TMEM133Q9H2Q1 129 aa17.7■□□□□ 0.42
SNX1-206ENST00000559389 ZNF69Q9UC07 566 aa17.7■□□□□ 0.42
SNX1-206ENST00000559389 DPPA5A6NC42 116 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 APOA1P02647 267 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 GSTP1P09211 210 aaKnown RBP17.69■□□□□ 0.42
SNX1-206ENST00000559389 CD3GP09693 182 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 UBE2E1P51965 193 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 BPIFB3P59826 476 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 ZNF260Q3ZCT1 412 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 OR52W1Q6IF63 320 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 BAIAP2L2Q6UXY1 529 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 BRD3OSQ6XYD6 125 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 OR10A7Q8NGE5 316 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 ARL11Q969Q4 196 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 SUCNR1Q9BXA5 334 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 DIABLOQ9NR28 239 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 IDI2-AS1Q9NZ38 188 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 NDUFA13Q9P0J0 144 aa17.69■□□□□ 0.42
SNX1-206ENST00000559389 A0A087X0M5 115 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 A0A1B0GX30 115 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 TMEM235A6NFC5 223 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 POM121CA8CG34 1229 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 HPGDSO60760 199 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 CD34P28906 385 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 SCGB2A2Q13296 93 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 HMGN3Q15651 99 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 TUSC1Q2TAM9 212 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 CDNFQ49AH0 187 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 PNKDQ8N490 385 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 OR13D1Q8NGV5 346 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 RFESDQ8TAC1 157 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 UBALD1Q8TB05 177 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 S100A16Q96FQ6 103 aaKnown RBP17.68■□□□□ 0.42
SNX1-206ENST00000559389 SLIRPQ9GZT3 109 aaKnown RBP17.68■□□□□ 0.42
SNX1-206ENST00000559389 MS4A7Q9GZW8 240 aaPredicted RBP17.68■□□□□ 0.42
SNX1-206ENST00000559389 TAF9BQ9HBM6 251 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 RAB9BQ9NP90 201 aa17.68■□□□□ 0.42
SNX1-206ENST00000559389 ELF5Q9UKW6 265 aaPredicted RBP17.68■□□□□ 0.42
SNX1-206ENST00000559389 MTORP42345 2549 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 TRAV18A0A075B6X5 111 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 IGHV2-26A0A0B4J1V2 119 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 ODF3BA8MYP8 253 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 F2RL2O00254 374 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 NPFFO15130 113 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 XRCC3O43542 346 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 HBZP02008 142 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 FCGR3AP08637 254 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 FPR2P25090 351 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 MRPS15P82914 257 aaKnown RBP17.67■□□□□ 0.42
SNX1-206ENST00000559389 ARFRP1Q13795 201 aa17.67■□□□□ 0.42
SNX1-206ENST00000559389 PNLIPRP3Q17RR3 467 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms