RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 COLQQ9Y215 455 aaPredicted RBP10.98□□□□□ -0.65
LDLR-207ENST00000558013 EP300Q09472 2414 aaPredicted RBP10.98□□□□□ -0.65
LDLR-207ENST00000558013 C1orf196B1AJZ1 125 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 WRBO00258 174 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 TUSC2O75896 110 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 PSG2P11465 335 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 RAB5BP61020 215 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 RND3P61587 244 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 VAMP2P63027 116 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 TMEM267Q0VDI3 215 aaPredicted RBP10.98□□□□□ -0.65
LDLR-207ENST00000558013 ABHD17BQ5VST6 288 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 C1orf210Q8IVY1 113 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 NANPQ8TBE9 248 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 PLEKHF2Q9H8W4 249 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 ATP23Q9Y6H3 246 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 H0YL77 283 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 ATP1A1-AS1Q5TC04 95 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 PEAR1Q5VY43 1037 aaPredicted RBP10.98□□□□□ -0.65
LDLR-207ENST00000558013 APOBEC3DQ96AK3 386 aaPredicted RBP10.98□□□□□ -0.65
LDLR-207ENST00000558013 APH1AQ96BI3 265 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 FAM173AQ9BQD7 235 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 FAM86C1Q9NVL1 165 aa10.98□□□□□ -0.65
LDLR-207ENST00000558013 MGAQ8IWI9 3026 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 IGHEP01854 428 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 RAB5AP20339 215 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 UCP1P25874 307 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 ID3Q02535 119 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 SOHLH1Q5JUK2 328 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 RNF115Q9Y4L5 304 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 MMP24Q9Y5R2 645 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 C5orf52A6NGY3 159 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 MT-ND4LP03901 98 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 CELA3BP08861 270 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 NQO2P16083 231 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 ZNF14P17017 642 aaPredicted RBP10.97□□□□□ -0.65
LDLR-207ENST00000558013 VDAC1P21796 283 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 ERVS71-1P61550 626 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 FABP9Q0Z7S8 132 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 ZNF343Q6P1L6 599 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 IL22RA1Q8N6P7 574 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 OR5P3Q8WZ94 311 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 TECTBQ96PL2 329 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 PPP1R3CQ9UQK1 317 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 STRAPQ9Y3F4 350 aaKnown RBP10.97□□□□□ -0.65
LDLR-207ENST00000558013 URGCP-MRPS24S4R325 110 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 SVILO95425 2214 aa10.97□□□□□ -0.65
LDLR-207ENST00000558013 RBFOX3A6NFN3 312 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 PITX3O75364 302 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 SLC34A2O95436 690 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 RPS23P62266 143 aaKnown RBP10.96□□□□□ -0.65
LDLR-207ENST00000558013 PLGLB1Q02325 96 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 TLE1Q04724 770 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 ALKBH6Q3KRA9 238 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 GPR146Q96CH1 333 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 HIST1H2AAQ96QV6 131 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 DEFB127Q9H1M4 99 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 ARRDC1-AS1Q9H2J1 176 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 USF3Q68DE3 2245 aa10.96□□□□□ -0.65
LDLR-207ENST00000558013 RP1L1Q8IWN7 2480 aaPredicted RBP10.96□□□□□ -0.65
LDLR-207ENST00000558013 TXNL1O43396 289 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 SYNGR4O95473 234 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 MT-CO3P00414 261 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 S100A6P06703 90 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 FOLR2P14207 255 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 AGAP20933 346 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 ACP1P24666 158 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 F2RP25116 425 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 ZNF266Q14584 549 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 DCAF10Q5QP82 559 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 ZNF324BQ6AW86 544 aaPredicted RBP10.96□□□□□ -0.66
LDLR-207ENST00000558013 SPRY4Q9C004 299 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 VSIRQ9H7M9 311 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 DLL3Q9NYJ7 618 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 MRPS18CQ9Y3D5 142 aaKnown RBP10.96□□□□□ -0.66
LDLR-207ENST00000558013 ARHGAP21Q5T5U3 1957 aa10.96□□□□□ -0.66
LDLR-207ENST00000558013 SIRPB1O00241 398 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 IL18BPO95998 194 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 IGKV1-39P01597 117 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 TFF1P04155 84 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 IGKV1D-39P04432 117 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 IAPPP10997 89 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 ZNF16P17020 682 aaPredicted RBP10.95□□□□□ -0.66
LDLR-207ENST00000558013 RAB5CP51148 216 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 CMTM1Q8IZ96 169 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 FAM185AQ8N0U4 392 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 CYB561D1Q8N8Q1 229 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 OR1K1Q8NGR3 316 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 GUCD1Q96NT3 240 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 RSG1Q9BU20 258 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 TTC28Q96AY4 2481 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 SS18L1O75177 396 aaPredicted RBP10.95□□□□□ -0.66
LDLR-207ENST00000558013 WISP2O76076 250 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 IGLV2-14P01704 120 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 HMGN3Q15651 99 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 WDR86Q86TI4 376 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 THNSL2Q86YJ6 484 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 COMMD1Q8N668 190 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 OR10J5Q8NHC4 309 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 PBDC1Q9BVG4 233 aa10.95□□□□□ -0.66
LDLR-207ENST00000558013 LINC00470Q9BZP3 86 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms