RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 GAMTQ14353 236 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 SSX2Q16385 188 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 KIAA2026Q5HYC2 2103 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 AADACL3Q5VUY0 350 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 Q6ZPA2 131 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 NANOS1Q8WY41 292 aaKnown RBP9.98□□□□□ -0.81
SHMT2-212ENST00000554467 LIME1Q9H400 295 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 RHBDL1O75783 438 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 HIST1H1BP16401 226 aaKnown RBP9.98□□□□□ -0.81
SHMT2-212ENST00000554467 HLA-GP17693 338 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 PSMB6P28072 239 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 RBM11P57052 281 aaKnown RBP9.98□□□□□ -0.81
SHMT2-212ENST00000554467 GABRA6Q16445 453 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 SEM1Q6ZVN7 128 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 TGIF2LXQ8IUE1 241 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 RBMXL3Q8N7X1 1067 aaKnown RBP9.98□□□□□ -0.81
SHMT2-212ENST00000554467 KIRREL1Q96J84 757 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 PRO1933Q9H354 126 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 ZNF71Q9NQZ8 489 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-212ENST00000554467 FBXO24O75426 580 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 NAAAQ02083 359 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 TGFBR3Q03167 851 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 SURF2Q15527 256 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-212ENST00000554467 FAM189A2Q15884 450 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 TBC1D28Q2M2D7 210 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 CEACAM21Q3KPI0 293 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 FAM76BQ5HYJ3 339 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 BTNL8Q6UX41 500 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 Q6ZT83 130 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 CXorf67Q86X51 503 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-212ENST00000554467 TOMM40LQ969M1 308 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 TMEM230Q96A57 120 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 MALSU1Q96EH3 234 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 HIST1H2AAQ96QV6 131 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 ZNF2Q9BSG1 426 aaPredicted RBP9.98□□□□□ -0.81
SHMT2-212ENST00000554467 SCNM1Q9BWG6 230 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 ANAPC10Q9UM13 185 aa9.98□□□□□ -0.81
SHMT2-212ENST00000554467 A0A1W2PPE2 198 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 ANKRD30BLA7E2S9 258 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 IFNA2P01563 188 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 CDX1P47902 265 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-212ENST00000554467 FXYD4P59646 89 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 VAX1Q5SQQ9 334 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 GFI1BQ5VTD9 330 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 CLEC9AQ6UXN8 241 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 MITD1Q8WV92 249 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 YPEL4Q96NS1 127 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 TUBA4BQ9H853 241 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 CDH20Q9HBT6 801 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 MYOZ1Q9NP98 299 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-212ENST00000554467 OR8U9P0C7N5 309 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 DDTP30046 118 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 PTGER4P35408 488 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 GLP1RP43220 463 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 LPCAT3Q6P1A2 487 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 SLC22A25Q6T423 547 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 ASCL4Q6XD76 172 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 OR8U1Q8NH10 309 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 RTBDNQ9BSG5 229 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-212ENST00000554467 SMPD2O60906 423 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 RAB5CP51148 216 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 PPP1CBP62140 327 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 ZDHHC22Q8N966 263 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 SLC25A40Q8TBP6 338 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 NEK7Q8TDX7 302 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 PRRX2Q99811 253 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 SSX3Q99909 188 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 SCRT1Q9BWW7 348 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 SH3BGRL2Q9UJC5 107 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 ZDHHC8Q9ULC8 765 aa9.97□□□□□ -0.81
SHMT2-212ENST00000554467 CACNA1DQ01668 2161 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 A0A1B0GV50 99 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 H0YL77 283 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 WDR1O75083 606 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 TNFSF13O75888 250 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 CRHP06850 196 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 TBPP20226 339 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 MPV17P39210 176 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 GUSBP1Q15486 140 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 NSUN5P2Q63ZY6 315 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 CLEC18BQ6UXF7 455 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 OR1J1Q8NGS3 322 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.96□□□□□ -0.81
SHMT2-212ENST00000554467 OR5AC2Q9NZP5 309 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 ANXA10Q9UJ72 324 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 GPR132Q9UNW8 380 aa9.96□□□□□ -0.81
SHMT2-212ENST00000554467 TRBV6-7A0A0A0MS04 114 aa9.96□□□□□ -0.82
SHMT2-212ENST00000554467 BTBD17A6NE02 478 aa9.96□□□□□ -0.82
SHMT2-212ENST00000554467 HS3ST1O14792 307 aa9.96□□□□□ -0.82
SHMT2-212ENST00000554467 TAS2R46P59540 309 aa9.96□□□□□ -0.82
SHMT2-212ENST00000554467 OR5P3Q8WZ94 311 aa9.96□□□□□ -0.82
SHMT2-212ENST00000554467 EXTL1Q92935 676 aa9.96□□□□□ -0.82
SHMT2-212ENST00000554467 STARD4Q96DR4 205 aa9.96□□□□□ -0.82
SHMT2-212ENST00000554467 ABHD17AQ96GS6 310 aa9.96□□□□□ -0.82
SHMT2-212ENST00000554467 OSGIN2Q9Y236 505 aa9.96□□□□□ -0.82
SHMT2-212ENST00000554467 A0A087X0M5 115 aa9.95□□□□□ -0.82
SHMT2-212ENST00000554467 A0A1B0GX30 115 aa9.95□□□□□ -0.82
SHMT2-212ENST00000554467 TRAPPC2LH3BP13 241 aa9.95□□□□□ -0.82
SHMT2-212ENST00000554467 H7C1Q1 480 aa9.95□□□□□ -0.82
SHMT2-212ENST00000554467 PDCD6O75340 191 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms