RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 ERVFC1-1P60608 527 aa10.56□□□□□ -0.72
SHMT2-207ENST00000553837 GNMTQ14749 295 aa10.56□□□□□ -0.72
SHMT2-207ENST00000553837 FAM27BQ5VT28 67 aa10.56□□□□□ -0.72
SHMT2-207ENST00000553837 Q6ZSR3 168 aa10.56□□□□□ -0.72
SHMT2-207ENST00000553837 OR10G4Q8NGN3 311 aa10.56□□□□□ -0.72
SHMT2-207ENST00000553837 RBMXL1Q96E39 390 aaKnown RBP10.56□□□□□ -0.72
SHMT2-207ENST00000553837 DECR2Q9NUI1 292 aa10.56□□□□□ -0.72
SHMT2-207ENST00000553837 ZNF581Q9P0T4 197 aa10.56□□□□□ -0.72
SHMT2-207ENST00000553837 AK3Q9UIJ7 227 aa10.56□□□□□ -0.72
SHMT2-207ENST00000553837 TECTAO75443 2155 aa10.56□□□□□ -0.72
SHMT2-207ENST00000553837 TRBV24-1A0A075B6N3 115 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 ZNF705GA8MUZ8 300 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-207ENST00000553837 SOX15O60248 233 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 CA11O75493 328 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 HPNP05981 417 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 TCN2P20062 427 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 CRYGSP22914 178 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 BLVRBP30043 206 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-207ENST00000553837 ALDH3B1P43353 468 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 OR3A1P47881 315 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 RAC3P60763 192 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 MRPS34P82930 218 aaKnown RBP10.55□□□□□ -0.72
SHMT2-207ENST00000553837 PNRC1Q12796 327 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-207ENST00000553837 TAF9Q16594 264 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 ZNF774Q6NX45 483 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 FBXW12Q6X9E4 464 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 NAXEQ8NCW5 288 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 OR14L1PQ8NHC6 308 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 FGFBP3Q8TAT2 258 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 CT55Q8WUE5 264 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 WFIKKN1Q96NZ8 548 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 PECRQ9BY49 303 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 IL17BQ9UHF5 180 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 IGKV1D-8A0A087WSZ0 117 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 B4E171 279 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 SYNGR3O43761 229 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 CXCL13O43927 109 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 AMBPP02760 352 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 ATP6V0CP27449 155 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 SRD5A2P31213 254 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 EWSR1Q01844 656 aaKnown RBP eCLIP10.55□□□□□ -0.72
SHMT2-207ENST00000553837 TMEM187Q14656 261 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 RAB35Q15286 201 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 ARSJQ5FYB0 599 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-207ENST00000553837 WIPI1Q5MNZ9 446 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-207ENST00000553837 LRTM2Q8N967 370 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 SGCZQ96LD1 299 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 ALKBH3Q96Q83 286 aaPredicted RBP10.55□□□□□ -0.72
SHMT2-207ENST00000553837 GPR173Q9NS66 373 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 LOXL2Q9Y4K0 774 aa10.55□□□□□ -0.72
SHMT2-207ENST00000553837 IL18BPO95998 194 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 CYB5R3P00387 301 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-207ENST00000553837 HBE1P02100 147 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 OPN1MWP04001 364 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 P04436 131 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 OPN1MW2P0DN77 364 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 OPN1MW3P0DN78 364 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 B4GALT1P15291 398 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 NOVA1P51513 510 aaKnown RBP10.54□□□□□ -0.72
SHMT2-207ENST00000553837 PIGPP57054 158 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 RPL23AP62750 156 aaKnown RBP10.54□□□□□ -0.72
SHMT2-207ENST00000553837 SP6Q3SY56 376 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 SP5Q6BEB4 398 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-207ENST00000553837 SMIM15Q7Z3B0 74 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 LYZL2Q7Z4W2 148 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 FBXL14Q8N1E6 418 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 OR1P1Q8NH06 330 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 PSMF1Q92530 271 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 HAS2Q92819 552 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 ABHD14AQ9BUJ0 271 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 NAA60Q9H7X0 242 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 CDH20Q9HBT6 801 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 ZNF701Q9NV72 531 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-207ENST00000553837 RCL1Q9Y2P8 373 aaKnown RBP10.54□□□□□ -0.72
SHMT2-207ENST00000553837 DOCK10Q96BY6 2186 aa10.54□□□□□ -0.72
SHMT2-207ENST00000553837 IGKV1-27A0A075B6S5 117 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 TK1P04183 234 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 ACP1P24666 158 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 HOXC12P31275 282 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 ABCA11PQ4W5N1 156 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 DCAF12Q5T6F0 453 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 CLDND2Q8NHS1 167 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 GNPNAT1Q96EK6 184 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-207ENST00000553837 BOD1Q96IK1 185 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 ZNF845Q96IR2 970 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-207ENST00000553837 C18orf12Q96KH6 178 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 HDHD3Q9BSH5 251 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-207ENST00000553837 SF3B5Q9BWJ5 86 aaKnown RBP10.53□□□□□ -0.72
SHMT2-207ENST00000553837 TMEM38BQ9NVV0 291 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 MCTS1Q9ULC4 181 aaKnown RBP10.53□□□□□ -0.72
SHMT2-207ENST00000553837 A0A1W2PNU3 283 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-207ENST00000553837 GEMIN2O14893 280 aaKnown RBP10.53□□□□□ -0.72
SHMT2-207ENST00000553837 TRAPPC6AO75865 159 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 FUT3P21217 361 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 APLNRP35414 380 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 IDH3GP51553 393 aaPredicted RBP10.53□□□□□ -0.72
SHMT2-207ENST00000553837 LIAT1Q6ZQX7 453 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 C6orf201Q7Z4U5 140 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 LGI3Q8N145 548 aa10.53□□□□□ -0.72
SHMT2-207ENST00000553837 OR2C3Q8N628 320 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms