RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 TGFBR1P36897 503 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 EFNB2P52799 333 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 LSM3P62310 102 aaKnown RBP11.47□□□□□ -0.57
PTCH1-226ENST00000553011 DYNC1I2Q13409 638 aaKnown RBP11.47□□□□□ -0.57
PTCH1-226ENST00000553011 LTC4SQ16873 150 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 ZNF626Q68DY1 528 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 FAM89BQ8N5H3 189 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.47□□□□□ -0.57
PTCH1-226ENST00000553011 OR11H6Q8NGC7 330 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 OR4K15Q8NH41 348 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 UBALD1Q8TB05 177 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 KIRREL1Q96J84 757 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 FAAP24Q9BTP7 215 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 CLEC7AQ9BXN2 247 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 LIN7BQ9HAP6 207 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 TNFRSF19Q9NS68 423 aa11.47□□□□□ -0.57
PTCH1-226ENST00000553011 FOXI3A8MTJ6 420 aaPredicted RBP11.46□□□□□ -0.57
PTCH1-226ENST00000553011 NPIPB11E5RHQ5 1161 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 H3BUI4 141 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 PAHP00439 452 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 IGHV4-59P01825 116 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 NFYBP25208 207 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 RANBP1P43487 201 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 VEGFCP49767 419 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 LGALS4P56470 323 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 TIMM50Q3ZCQ8 353 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 LDLRAD2Q5SZI1 272 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 OR52W1Q6IF63 320 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 SFXN4Q6P4A7 337 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 GDPGP1Q6ZNW5 385 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 LDLRAD3Q86YD5 345 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 GAPTQ8N292 157 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 ABHD12Q8N2K0 398 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 OR13F1Q8NGS4 319 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 C19orf24Q9BVV8 132 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 LINC00574Q9H8X3 128 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 ZNF286AQ9HBT8 521 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 IDI2-AS1Q9NZ38 188 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 ZNRD1Q9P1U0 126 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 DAPK2Q9UIK4 370 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 RAB22AQ9UL26 194 aa11.46□□□□□ -0.57
PTCH1-226ENST00000553011 TENM1Q9UKZ4 2725 aa11.46□□□□□ -0.58
PTCH1-226ENST00000553011 C15orf65H3BRN8 121 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 CLDN34H7C241 214 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 CA11O75493 328 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 RCC1P18754 421 aaPredicted RBP11.45□□□□□ -0.58
PTCH1-226ENST00000553011 GZMHP20718 246 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 CD34P28906 385 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 TMEM50BP56557 158 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 DYNAPQ8N1N2 210 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 BEND2Q8NDZ0 799 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 MRPL30Q8TCC3 161 aaKnown RBP11.45□□□□□ -0.58
PTCH1-226ENST00000553011 FAM216AQ8WUB2 273 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 ZFAND2BQ8WV99 257 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 SSMEM1Q8WWF3 244 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 LEAP2Q969E1 77 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 ARL11Q969Q4 196 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 FUNDC2Q9BWH2 189 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 MRPS26Q9BYN8 205 aaKnown RBP11.45□□□□□ -0.58
PTCH1-226ENST00000553011 PLEKHJ1Q9NW61 149 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 TRAPPC2LQ9UL33 140 aa11.45□□□□□ -0.58
PTCH1-226ENST00000553011 A0A087X0M5 115 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 A0A1B0GX30 115 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 C12orf77C9JDV5 145 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 IGHV3-7P01780 117 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 RNASE1P07998 156 aaKnown RBP11.44□□□□□ -0.58
PTCH1-226ENST00000553011 SNRPBP14678 240 aaKnown RBP11.44□□□□□ -0.58
PTCH1-226ENST00000553011 IER3P46695 156 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 MOGAT2Q3SYC2 334 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 PLAC9Q5JTB6 97 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 FAM53AQ6NSI3 398 aaPredicted RBP11.44□□□□□ -0.58
PTCH1-226ENST00000553011 C5orf24Q7Z6I8 188 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 OR56B1Q8NGI3 324 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 OR4P4Q8NGL7 312 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 ARHGAP5-AS1Q96IT6 56 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 PECRQ9BY49 303 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 CHIAQ9BZP6 476 aa11.44□□□□□ -0.58
PTCH1-226ENST00000553011 TBL2Q9Y4P3 447 aaKnown RBP11.44□□□□□ -0.58
PTCH1-226ENST00000553011 ORC5O43913 435 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 IGLV1-47P01700 117 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 RAB6AP20340 208 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 SSX2Q16385 188 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 PLA1AQ53H76 456 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 C6orf183Q5T699 404 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 IDNKQ5T6J7 187 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 OLFML2AQ68BL7 652 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 Q6ZPA2 131 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 Q6ZTK2 550 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 TMEM86BQ8N661 226 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 OR1L1Q8NH94 360 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 NDNFQ8TB73 568 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 LGALS14Q8TCE9 139 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 TAF15Q92804 592 aaKnown RBP eCLIP11.43□□□□□ -0.58
PTCH1-226ENST00000553011 HDHD3Q9BSH5 251 aaPredicted RBP11.43□□□□□ -0.58
PTCH1-226ENST00000553011 NAA50Q9GZZ1 169 aaKnown RBP11.43□□□□□ -0.58
PTCH1-226ENST00000553011 MEGF9Q9H1U4 602 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 ZMAT3Q9HA38 289 aaKnown RBP11.43□□□□□ -0.58
PTCH1-226ENST00000553011 AK3Q9UIJ7 227 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 HSF4Q9ULV5 492 aa11.43□□□□□ -0.58
PTCH1-226ENST00000553011 POMT1Q9Y6A1 747 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms