RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 GEMIN2O14893 280 aaKnown RBP6.6□□□□□ -1.35
LIMA1-216ENST00000552909 GGCTO75223 188 aaKnown RBP6.6□□□□□ -1.35
LIMA1-216ENST00000552909 CLDN14O95500 239 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 PNPP00491 289 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 RPLP1P05386 114 aaKnown RBP6.6□□□□□ -1.35
LIMA1-216ENST00000552909 NPSP0C0P6 89 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 PGA4P0DJD7 388 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 PGA5P0DJD9 388 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 RBMXP38159 391 aaKnown RBP6.6□□□□□ -1.35
LIMA1-216ENST00000552909 GNG10P50151 68 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 PLPPR5Q32ZL2 321 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 C1orf140Q5VVS0 124 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF787Q6DD87 383 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 TMEM211Q6ICI0 200 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 THNSL2Q86YJ6 484 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 FNDC9Q8TBE3 224 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 NPRL2Q8WTW4 380 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 MRGPRX4Q96LA9 322 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 SH3BGRL3Q9H299 93 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 C1orf123Q9NWV4 160 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 FOXD3Q9UJU5 478 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-216ENST00000552909 OR52A1Q9UKL2 312 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 HIF3AQ9Y2N7 669 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 HCFC1P51610 2035 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 ANKHD1Q8IWZ3 2542 aaKnown RBP6.6□□□□□ -1.35
LIMA1-216ENST00000552909 SPG11Q96JI7 2443 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 VPS13CQ709C8 3753 aa6.6□□□□□ -1.35
LIMA1-216ENST00000552909 E5RGE8 158 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SCGB1D2O95969 90 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 HLA-DQA2P01906 255 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 CHRM2P08172 466 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SRP19P09132 144 aaKnown RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 ERVFC1-1P60608 527 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 MFGE8Q08431 387 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 FOXF2Q12947 444 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 UNC119Q13432 240 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SP5Q6BEB4 398 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 TMEM182Q6ZP80 229 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SLC35E3Q7Z769 313 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 GGNQ86UU5 652 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 CATSPERDQ86XM0 798 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF283Q8N7M2 679 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 LRRC75AQ8NAA5 344 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 C9orf106Q8NAJ2 232 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 OR5H2Q8NGV7 314 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 LIPHQ8WWY8 451 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 ZNF845Q96IR2 970 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 NUDT16L1Q9BRJ7 211 aaKnown RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SERINC1Q9NRX5 453 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 CBLN4Q9NTU7 201 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 HHLA2Q9UM44 414 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 NSG2Q9Y328 171 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 V9GYS6 101 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 FAM90A27PA6NNH2 459 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 B4DEV8 164 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 K7N7A8 449 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 GPR137BO60478 399 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 NPIPB7O75200 414 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SCAF4O95104 1147 aaKnown RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 AHSA1O95433 338 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 BPNT1O95861 308 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 IFNA21P01568 189 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 BGLAPP02818 100 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 ASAH2BP0C7U1 165 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 RPS2P15880 293 aaKnown RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 EPHA1P21709 976 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 CHRNB4P30926 498 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 CEACAM8P31997 349 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 RND3P61587 244 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 MRPS11P82912 194 aaKnown RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 GLO1Q04760 184 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 TFF3Q07654 80 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 RAB35Q15286 201 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 HAGHQ16775 308 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SLC25A53Q5H9E4 307 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SLC18B1Q6NT16 456 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 KCTD18Q6PI47 426 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SGPP2Q8IWX5 399 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 GCNT2Q8N0V5 402 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SLC35G3Q8N808 338 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 OR8G5Q8NG78 346 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 OR1P1Q8NH06 330 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 DDIT4LQ96D03 193 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 SPOCK3Q9BQ16 436 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 RIMS4Q9H426 269 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-216ENST00000552909 CNTD2Q9H8S5 307 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 WFDC1Q9HC57 220 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 B9D1Q9UPM9 204 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 AKAP6Q13023 2319 aa6.59□□□□□ -1.35
LIMA1-216ENST00000552909 MBD3L4A6NDZ8 208 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 MBD3L3A6NE82 208 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 A6NIZ1 184 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 MBD3L5A6NJ08 208 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 ETV2O00321 342 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 CRTAPO75718 401 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 TK1P04183 234 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 BMP5P22003 454 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 GLRA1P23415 457 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 SFTPDP35247 375 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 PTGER4P35408 488 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms