RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ZNF266Q14584 549 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 CEACAM21Q3KPI0 293 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF295-AS1Q8N0V1 137 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 Q8NFD4 153 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 OR1J1Q8NGS3 322 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 MRPL30Q8TCC3 161 aaKnown RBP6.4□□□□□ -1.39
LIMA1-213ENST00000552720 IL1F10Q8WWZ1 152 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 PBDC1Q9BVG4 233 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 TUBA4BQ9H853 241 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 FAM86C1Q9NVL1 165 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 PLA2G3Q9NZ20 509 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 MMP24Q9Y5R2 645 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 LAMA5O15230 3695 aa6.4□□□□□ -1.39
LIMA1-213ENST00000552720 LINC00587B1AMM8 73 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 TRAPPC2LH3BP13 241 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 H3BQ15 152 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 WRBO00258 174 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 PGLYRP1O75594 196 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-213ENST00000552720 TUSC2O75896 110 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 OR2C1O95371 312 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 IGHV2-5P01817 119 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 SRP19P09132 144 aaKnown RBP6.39□□□□□ -1.39
LIMA1-213ENST00000552720 JMJD7P0C870 316 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 TDGF1P13385 188 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 UCP1P25874 307 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 CLDN18P56856 261 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 RAB1AP62820 205 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 ID3Q02535 119 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 SPATA46Q5T0L3 261 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 DCAF12Q5T6F0 453 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 Q6ZRM9 215 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 WDR5BQ86VZ2 330 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 PRR18Q8N4B5 295 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 IL22RA1Q8N6P7 574 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 CYB561D1Q8N8Q1 229 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 RAB39BQ96DA2 213 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 TECTBQ96PL2 329 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 OR1A1Q9P1Q5 309 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 LOXL2Q9Y4K0 774 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 RNF115Q9Y4L5 304 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 ATP23Q9Y6H3 246 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 TRAV24A0A0B4J272 114 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 TXNL1O43396 289 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 CLN5O75503 358 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 PSG2P11465 335 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 VDAC1P21796 283 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 SRPXP78539 464 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 ICAM4Q14773 271 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 RHEBQ15382 184 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 Q6ZS49 121 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 FAM185AQ8N0U4 392 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 OR2M7Q8NG81 312 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 TMEM45BQ96B21 275 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 GPR146Q96CH1 333 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 YPEL4Q96NS1 127 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 VSIRQ9H7M9 311 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF703Q9H7S9 590 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-213ENST00000552720 NIT2Q9NQR4 276 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 ERRFI1Q9UJM3 462 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-213ENST00000552720 URGCP-MRPS24S4R325 110 aa6.39□□□□□ -1.39
LIMA1-213ENST00000552720 CD300LBA8K4G0 201 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SERPINA7P05543 415 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 CXCL1P09341 107 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 PMELP40967 661 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 DUSP3P51452 185 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 HOXA4Q00056 320 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 HIKESHIQ53FT3 197 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SP5Q6BEB4 398 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 LINC00696Q6ZRV3 163 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 NUFIP2Q7Z417 695 aaKnown RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 THNSL2Q86YJ6 484 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 MKXQ8IYA7 352 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 LFNGQ8NES3 379 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SPIN2AQ99865 258 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SPIN2BQ9BPZ2 258 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 RSG1Q9BU20 258 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SLC25A31Q9H0C2 315 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 C12orf49Q9H741 205 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SEBOXQ9HB31 216 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 GSN-AS1Q9NRJ2 163 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 PRSS50Q9UI38 385 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 ATPIF1Q9UII2 106 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 DMXL1Q9Y485 3027 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 IGKV3D-15A0A087WSY6 115 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 CLEC18AA5D8T8 446 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A10PA6NDY2 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A18PA6NE21 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A16PA6NEW6 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A20PA6NIJ5 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A8PA6NJQ4 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A7PA6NKC0 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A22PA8MWA6 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A12PA8MX19 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A5PA8MXJ8 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A23PA8MXZ1 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 YIF1AO95070 293 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SCAF4O95104 1147 aaKnown RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 IGKV1-39P01597 117 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 IGKV1D-39P04432 117 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A15PP0C7V4 464 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms