RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 CSF1P09603 554 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 CTXN2P0C2S0 81 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 GSTT2BP0CG30 244 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 IL7P13232 177 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 GDNFP39905 211 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 GNB2P62879 340 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 RPL31P62899 125 aaKnown RBP7.9□□□□□ -1.14
LIMA1-211ENST00000552338 MRPS15P82914 257 aaKnown RBP7.9□□□□□ -1.14
LIMA1-211ENST00000552338 GUCA2AQ02747 115 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 KLF9Q13886 244 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-211ENST00000552338 ATXN7L3Q14CW9 347 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-211ENST00000552338 CARTPTQ16568 116 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 C17orf58Q2M2W7 97 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 PYDC2Q56P42 97 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 VAX1Q5SQQ9 334 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 TMEM200BQ69YZ2 307 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 DHRS11Q6UWP2 260 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 BTN2A1Q7KYR7 527 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 OVCH2Q7RTZ1 564 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 TRAPPC6BQ86SZ2 158 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 KIR3DL3Q8N743 410 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 DTX3Q8N9I9 347 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 BEST4Q8NFU0 473 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 OR5AP2Q8NGF4 316 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 OR4A4PQ8NGN8 299 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 SNAPC3Q92966 411 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 BORCS5Q969J3 196 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 C7orf50Q9BRJ6 194 aaKnown RBP7.9□□□□□ -1.14
LIMA1-211ENST00000552338 HDHD3Q9BSH5 251 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-211ENST00000552338 REG4Q9BYZ8 158 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 ANXA10Q9UJ72 324 aa7.9□□□□□ -1.14
LIMA1-211ENST00000552338 WNK2Q9Y3S1 2297 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 MEIKINA0A087WXM9 373 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 TRGV10A0A0A0MS01 117 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 TRBV6-7A0A0A0MS04 114 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 KBTBD11-OT1A0A1B0GTJ5 212 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 A0A1W2PPH5 198 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 M0R1W7 72 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 HSPB6O14558 160 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 ITGB1BP1O14713 200 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 LANCL1O43813 399 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 PPIAL4GP0DN37 164 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 RCC1P18754 421 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-211ENST00000552338 GATA3P23771 443 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 ZFP36P26651 326 aaKnown RBP7.89□□□□□ -1.15
LIMA1-211ENST00000552338 TAS2R19P59542 299 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 AP3S2P59780 193 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 SEC61A1P61619 476 aaKnown RBP7.89□□□□□ -1.15
LIMA1-211ENST00000552338 HLA-DRB3P79483 266 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 IFITM3Q01628 133 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 ACTBL2Q562R1 376 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF660Q6AZW8 331 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-211ENST00000552338 HEPN1Q6WQI6 88 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 FGFRL1Q8N441 504 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 GVQW1Q8N7I0 195 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 OR13A1Q8NGR1 328 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 OR4K15Q8NH41 348 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 SETD6Q8TBK2 473 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF596Q8TC21 504 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 NEK7Q8TDX7 302 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 ZFAND2BQ8WV99 257 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 GCDHQ92947 438 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF286AQ9HBT8 521 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 C19orf12Q9NSK7 152 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 SLC2A8Q9NY64 477 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 TRAPPC2LQ9UL33 140 aa7.89□□□□□ -1.15
LIMA1-211ENST00000552338 ITPR2Q14571 2701 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 POLQO75417 2590 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 LOC105371242A0A075B767 164 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 IGKV1D-8A0A087WSZ0 117 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 B4DSR2 109 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 C22orf46C9J442 243 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 FAM157AC9JC47 383 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 C12orf77C9JDV5 145 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 PLA2G10O15496 165 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 FABP7O15540 132 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 YPEL1O60688 119 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 TUSC2O75896 110 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF735P0CB33 412 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF728P0DKX0 622 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 NDUFB7P17568 137 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 CD34P28906 385 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 IL2RGP31785 369 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 EDDM3BP56851 147 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 LOXL3P58215 753 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 TAS2R46P59540 309 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 PAX8Q06710 450 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF273Q14593 569 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 HERPUD1Q15011 391 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 STEAP3Q658P3 488 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 TPRX1Q8N7U7 411 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 C8orf31Q8N9H6 132 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 GIMAP1Q8WWP7 306 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 GALMQ96C23 342 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 Q96MF0 132 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF714Q96N38 554 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 YPEL2Q96QA6 119 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 ST6GALNAC5Q9BVH7 336 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 GAL3ST2Q9H3Q3 398 aa7.88□□□□□ -1.15
LIMA1-211ENST00000552338 TAF9BQ9HBM6 251 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms