RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, human

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-205	ENST00000548650	KRTAP10-11	P60412	298 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	RPL23A	P62750	156 aa	Known RBP	13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	RIPK1	Q13546	671 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	MPV17L	Q2QL34	196 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	TMPRSS11A	Q6ZMR5	421 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	IZUMO1	Q8IYV9	350 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ZNF555	Q8NEP9	628 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ING4	Q9UNL4	249 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	DIMT1	Q9UNQ2	313 aa	Known RBP	13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ZNF281	Q9Y2X9	895 aa		13.75	□□□□□ -0.21
CHMP1A-205	ENST00000548650	IGHV1-3	A0A0C4DH29	117 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	IGHG2	P01859	326 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	CSTB	P04080	98 aa	Known RBP	13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	REG1B	P48304	166 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	EGFEM1P	Q0D2K5	195 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	EBI3	Q14213	229 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	HNF4G	Q14541	408 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	FAM53A	Q6NSI3	398 aa	Predicted RBP	13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	OR2W3	Q7Z3T1	314 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	MRPL41	Q8IXM3	137 aa	Known RBP	13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	LINC00311	Q8N616	119 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650		Q8N6K4	173 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	OR52M1	Q8NGK5	317 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	UBALD1	Q8TB05	177 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	CHPT1	Q8WUD6	406 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	PGLYRP3	Q96LB9	341 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ZNF184	Q99676	751 aa	Predicted RBP	13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	BABAM2	Q9NXR7	383 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	RCC2	Q9P258	522 aa	Known RBP	13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	CLEC2D	Q9UHP7	191 aa		13.74	□□□□□ -0.21
CHMP1A-205	ENST00000548650	TRAV8-7	A0A075B6U6	113 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	IRGM	A1A4Y4	181 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	SERPINE3	A8MV23	424 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	CCRL2	O00421	344 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	SDCBP	O00560	298 aa	Predicted RBP	13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	MYL12A	P19105	171 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	FST	P19883	344 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	GZMH	P20718	246 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	THBS3	P49746	956 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	RPS11	P62280	158 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	SLC22A6	Q4U2R8	563 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	DMKN	Q6E0U4	476 aa	Predicted RBP	13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ZNF497	Q6ZNH5	498 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	C18orf65	Q6ZTR6	163 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	SLC35E3	Q7Z769	313 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	C8orf31	Q8N9H6	132 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ZNF485	Q8NCK3	441 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	GHSR	Q92847	366 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	S100A13	Q99584	98 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	GFOD1	Q9NXC2	390 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	LINC00527	Q9UJ94	153 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	EXOSC1	Q9Y3B2	195 aa	Known RBP	13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	COL7A1	Q02388	2944 aa		13.73	□□□□□ -0.21
CHMP1A-205	ENST00000548650	IGHV3-72	A0A0B4J1Y9	119 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	WI2-2373I1.2	A0A1W2PRP0	233 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ORC5	O43913	435 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ZNF780A	O75290	641 aa	Predicted RBP	13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	GPX5	O75715	221 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	GTF2F2	P13984	249 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	HOXD3	P31249	432 aa	Predicted RBP	13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650		Q499Y3	187 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	YIF1B	Q5BJH7	314 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ATAD3C	Q5T2N8	411 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	C8orf86	Q6ZUL3	223 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ZFP41	Q8N8Y5	198 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	TMEM104	Q8NE00	496 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	OR51D1	Q8NGF3	324 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	NEK7	Q8TDX7	302 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ARL11	Q969Q4	196 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	ST6GALNAC6	Q969X2	333 aa		13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	EAF1	Q96JC9	268 aa	Predicted RBP	13.72	□□□□□ -0.21
CHMP1A-205	ENST00000548650	TRBV5-7	A0A0A0MS05	114 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	IGHV3-43	A0A0B4J1X8	118 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	AIP	O00170	330 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	BAG2	O95816	211 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	MT-ND4	P03905	459 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	GAPDH	P04406	335 aa	Known RBP	13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	IGHV3-43D	P0DP04	118 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	MOB3B	Q86TA1	216 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	TGIF2LX	Q8IUE1	241 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	FOXRED2	Q8IWF2	684 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	STPG2	Q8N412	459 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	CCDC107	Q8WV48	283 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	CKLF	Q9UBR5	152 aa		13.71	□□□□□ -0.21
CHMP1A-205	ENST00000548650	LINC01548	A6NM66	108 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	C12orf77	C9JDV5	145 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	SLC31A2	O15432	143 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	SLC6A1	P30531	599 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	GPR12	P47775	334 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	SLC35B1	P78383	322 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650		Q3ZCU0	254 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	COMMD1	Q8N668	190 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650		Q8N9W7	124 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	ZNF439	Q8NDP4	499 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	KLHL30-AS1	Q8NEE0	82 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	CYGB	Q8WWM9	190 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	MUL1	Q969V5	352 aa		13.7	□□□□□ -0.22
CHMP1A-205	ENST00000548650	TMEM80	Q96HE8	168 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms