RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 ABCB10Q9NRK6 738 aa7.1□□□□□ -1.27
VPS29-203ENST00000546588 RBFOX1Q9NWB1 397 aaKnown RBP7.1□□□□□ -1.27
VPS29-203ENST00000546588 CADP27708 2225 aa7.1□□□□□ -1.27
VPS29-203ENST00000546588 PLCE1Q9P212 2302 aa7.1□□□□□ -1.27
VPS29-203ENST00000546588 DSCAMO60469 2012 aa7.1□□□□□ -1.27
VPS29-203ENST00000546588 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.09□□□□□ -1.27
VPS29-203ENST00000546588 CLEC18AA5D8T8 446 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 NKX2-6A6NCS4 301 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 NAP1L6A6NFF2 107 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 LINC00587B1AMM8 73 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 NUPL2O15504 423 aaKnown RBP7.09□□□□□ -1.27
VPS29-203ENST00000546588 ADAM20O43506 726 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 SPRY1O43609 319 aaPredicted RBP7.09□□□□□ -1.27
VPS29-203ENST00000546588 ORC5O43913 435 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 ACTL6BO94805 426 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 FSTL3O95633 263 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 CLEC3BP05452 202 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 OCMP0CE72 109 aaPredicted RBP7.09□□□□□ -1.27
VPS29-203ENST00000546588 TMEM225BP0DP42 221 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 TBPP20226 339 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 SERPINA2P20848 420 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 LMO1P25800 156 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 SLC6A1P30531 599 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 APOBEC3AP31941 199 aaPredicted RBP7.09□□□□□ -1.27
VPS29-203ENST00000546588 PRSS3P35030 304 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 AP3S2P59780 193 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 KRTAP10-2P60368 255 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 FLI1Q01543 452 aaPredicted RBP7.09□□□□□ -1.27
VPS29-203ENST00000546588 BAMBIQ13145 260 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 OR8G1Q15617 311 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 PXDC1Q5TGL8 231 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 TRIQKQ629K1 86 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 CLEC18BQ6UXF7 455 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 SLC25A26Q70HW3 274 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 SCCPDHQ8NBX0 429 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 CLEC18CQ8NCF0 446 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 C19orf18Q8NEA5 215 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 OR4D10Q8NGI6 311 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 OR5D18Q8NGL1 313 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 OR51F2Q8NH61 342 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 OR52I2Q8NH67 350 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 LRRC20Q8TCA0 184 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 NPRL2Q8WTW4 380 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 FCAMRQ8WWV6 532 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 RNF170Q96K19 258 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 HIST1H2AAQ96QV6 131 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 S100A13Q99584 98 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 NEURL2Q9BR09 285 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 ALX4Q9H161 411 aaPredicted RBP7.09□□□□□ -1.27
VPS29-203ENST00000546588 ATG5Q9H1Y0 275 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 TREM2Q9NZC2 230 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 MYEF2Q9P2K5 600 aaKnown RBP7.09□□□□□ -1.27
VPS29-203ENST00000546588 RPH3ALQ9UNE2 315 aa7.09□□□□□ -1.27
VPS29-203ENST00000546588 TRBV6-6A0A0A6YYG2 114 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 MEIOCA2RUB1 952 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 ZNF729A6NN14 1252 aaPredicted RBP7.08□□□□□ -1.28
VPS29-203ENST00000546588 MARCH11A6NNE9 402 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 CEACAM18A8MTB9 384 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 A8MV72 311 aaPredicted RBP7.08□□□□□ -1.28
VPS29-203ENST00000546588 SRRM5B3KS81 715 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 TSPAN4O14817 238 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 SOCS1O15524 211 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 LYRM1O43325 122 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 SYNGR1O43759 233 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 ANGPTL7O43827 346 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 TIMM8AO60220 97 aaPredicted RBP7.08□□□□□ -1.28
VPS29-203ENST00000546588 LHBP01229 141 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 CSF1P09603 554 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 STAG3L2P0CL84 134 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 DTYMKP23919 212 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 RCVRNP35243 200 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 CDC34P49427 236 aaPredicted RBP7.08□□□□□ -1.28
VPS29-203ENST00000546588 RAG2P55895 527 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 RSU1Q15404 277 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 SLC22A6Q4U2R8 563 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 HAGHLQ6PII5 290 aaPredicted RBP7.08□□□□□ -1.28
VPS29-203ENST00000546588 WDR82Q6UXN9 313 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 Q6ZTK2 550 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 LRP11Q86VZ4 500 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 FOXRED2Q8IWF2 684 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 CENPSQ8N2Z9 138 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 TOMM5Q8N4H5 51 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 TMEM229BQ8NBD8 167 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 OR8S1Q8NH09 359 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 FAM222BQ8WU58 562 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 DVL3Q92997 716 aaPredicted RBP7.08□□□□□ -1.28
VPS29-203ENST00000546588 RAB3CQ96E17 227 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 NEIL1Q96FI4 390 aaPredicted RBP7.08□□□□□ -1.28
VPS29-203ENST00000546588 ZNF48Q96MX3 618 aaPredicted RBP7.08□□□□□ -1.28
VPS29-203ENST00000546588 SSX3Q99909 188 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 PECRQ9BY49 303 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 SELENOIQ9C0D9 397 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 SLC2A8Q9NY64 477 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 RASL12Q9NYN1 266 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 COPZ2Q9P299 210 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 RNF115Q9Y4L5 304 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 CFAP46Q8IYW2 2715 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 SPTA1P02549 2419 aa7.08□□□□□ -1.28
VPS29-203ENST00000546588 DIDO1Q9BTC0 2240 aaKnown RBP7.07□□□□□ -1.28
VPS29-203ENST00000546588 TRAV18A0A075B6X5 111 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms