RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 CER1O95813 267 aa12.64□□□□□ -0.39
HOXC11-202ENST00000546378 IGHV2-70P01814 119 aa12.64□□□□□ -0.39
HOXC11-202ENST00000546378 TCN2P20062 427 aa12.64□□□□□ -0.39
HOXC11-202ENST00000546378 FOXG1P55316 489 aaPredicted RBP12.64□□□□□ -0.39
HOXC11-202ENST00000546378 GRB2P62993 217 aaKnown RBP12.64□□□□□ -0.39
HOXC11-202ENST00000546378 FAM3AP98173 230 aa12.64□□□□□ -0.39
HOXC11-202ENST00000546378 CCNL2Q96S94 520 aaPredicted RBP12.64□□□□□ -0.39
HOXC11-202ENST00000546378 PSG2P11465 335 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 LYPD6Q86Y78 171 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 COMMD1Q8N668 190 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 TPRX1Q8N7U7 411 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 CHST5Q9GZS9 411 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 CRIM1Q9NZV1 1036 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 CACNG5Q9UF02 275 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 ADAMTS9Q9P2N4 1935 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 TSTD3H0UI37 97 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 SP9P0CG40 484 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 CARD18P57730 90 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 S100A12P80511 92 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 ZNF816Q0VGE8 651 aaPredicted RBP12.63□□□□□ -0.39
HOXC11-202ENST00000546378 DMBX1Q8NFW5 382 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 TVP23CQ96ET8 276 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 SMIM7Q9BQ49 75 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 PNRC2Q9NPJ4 139 aaKnown RBP12.63□□□□□ -0.39
HOXC11-202ENST00000546378 STARD10Q9Y365 291 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 CEP192Q8TEP8 1941 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 WNK2Q9Y3S1 2297 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 DEFB108AA8MXU0 73 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 PRF1P14222 555 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 ENDOGQ14249 297 aaKnown RBP12.63□□□□□ -0.39
HOXC11-202ENST00000546378 ELOBQ15370 118 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 TGIF2LXQ8IUE1 241 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 ADPRHL1Q8NDY3 354 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 OR5L2Q8NGL0 311 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 SPACA9Q96E40 222 aaPredicted RBP12.63□□□□□ -0.39
HOXC11-202ENST00000546378 SRXN1Q9BYN0 137 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 HDGFL3Q9Y3E1 203 aa12.63□□□□□ -0.39
HOXC11-202ENST00000546378 LRP4O75096 1905 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 FAM166BA8MTA8 275 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 DVL1O14640 695 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 PRB4P10163 310 aaPredicted RBP12.62□□□□□ -0.39
HOXC11-202ENST00000546378 ZNF266Q14584 549 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 WDR74Q6RFH5 385 aaPredicted RBP12.62□□□□□ -0.39
HOXC11-202ENST00000546378 RFESDQ8TAC1 157 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 MISP3Q96FF7 219 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 Q96M66 194 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 RPRMQ9NS64 109 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 LY6G6EA0A0G2JKS1 128 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 A0A0G2JRQ6 117 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 A0A1W2PNV4 684 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 TMEM127O75204 238 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 NTF4P34130 210 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 CEBPDP49716 269 aaPredicted RBP12.62□□□□□ -0.39
HOXC11-202ENST00000546378 PMS2P11Q13670 270 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 P2RY6Q15077 328 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 SLC25A47Q6Q0C1 308 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 OR4F5Q8NH21 305 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 BOD1Q96IK1 185 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 MRGPRX4Q96LA9 322 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 LURAP1Q96LR2 239 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 OR4F4Q96R69 305 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 FUT9Q9Y231 359 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 U3KQA8 63 aa12.62□□□□□ -0.39
HOXC11-202ENST00000546378 SMG1Q96Q15 3661 aaKnown RBP12.61□□□□□ -0.39
HOXC11-202ENST00000546378 FAM157AC9JC47 383 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 TDGF1P13385 188 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 SRSF4Q08170 494 aaKnown RBP12.61□□□□□ -0.39
HOXC11-202ENST00000546378 RSPO1Q2MKA7 263 aaPredicted RBP12.61□□□□□ -0.39
HOXC11-202ENST00000546378 C10orf91Q5T1B1 145 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 HEPN1Q6WQI6 88 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 OR2M3Q8NG83 312 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 LHX4Q969G2 390 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 BCO1Q9HAY6 547 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 CBLN4Q9NTU7 201 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 A0A1W2PQD3 144 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 OR5H1A6NKK0 313 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 SYNGR1O43759 233 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 ZIC3O60481 467 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 NGFP01138 241 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 SEC11BP0C7V7 166 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 MSX1P28360 303 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 HOXA6P31267 233 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 RPL29P47914 159 aaKnown RBP12.61□□□□□ -0.39
HOXC11-202ENST00000546378 RTL6Q6ICC9 239 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 BTNL3Q6UXE8 466 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 CCDC71LQ8N9Z2 235 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 HINT2Q9BX68 163 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 TWSG1Q9GZX9 223 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 TIMM8BQ9Y5J9 83 aaPredicted RBP12.61□□□□□ -0.39
HOXC11-202ENST00000546378 KALRNO60229 2985 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 MUC6Q6W4X9 2439 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 NUDT19A8MXV4 375 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 RFPL3SP0C7P2 107 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 ASPHD1Q5U4P2 390 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 ZNF705AQ6ZN79 300 aaPredicted RBP12.61□□□□□ -0.39
HOXC11-202ENST00000546378 OR6X1Q8NH79 312 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 MUCL1Q96DR8 90 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 C14orf144Q96I85 54 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 PCGF1Q9BSM1 259 aa12.61□□□□□ -0.39
HOXC11-202ENST00000546378 IGHV3-43A0A0B4J1X8 118 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms