RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 MED22Q15528 200 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 KLHL22Q53GT1 634 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 C9orf152Q5JTZ5 239 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 CCDC144NLQ6NUI1 221 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 Q6P435 159 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 BCDIN3DQ7Z5W3 292 aaKnown RBP5.73□□□□□ -1.49
YBX3-209ENST00000540747 SLC35F2Q8IXU6 374 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 STPG2Q8N412 459 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 MFSD4AQ8N468 514 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 Q8N6K4 173 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 CCDC54Q8NEL0 328 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 MYOZ3Q8TDC0 251 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 C10orf35Q96D05 121 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 KIRREL1Q96J84 757 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 DUX3Q96PT4 197 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 IL4I1Q96RQ9 567 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 CHCHD6Q9BRQ6 235 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 TEX12Q9BXU0 123 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 C6orf62Q9GZU0 229 aaPredicted RBP5.73□□□□□ -1.49
YBX3-209ENST00000540747 COMMD4Q9H0A8 199 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 PCDHB16Q9NRJ7 776 aa5.73□□□□□ -1.49
YBX3-209ENST00000540747 CCDC59Q9P031 241 aaKnown RBP5.73□□□□□ -1.49
YBX3-209ENST00000540747 ZNF729A6NN14 1252 aaPredicted RBP5.72□□□□□ -1.49
YBX3-209ENST00000540747 NUDT19A8MXV4 375 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 SIRPB1O00241 398 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 CCRL2O00421 344 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 SYT7O43581 403 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 KDM4BO94953 1096 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 APOA1P02647 267 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 RPLP1P05386 114 aaKnown RBP5.72□□□□□ -1.49
YBX3-209ENST00000540747 FAM106CPP0CH98 169 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 PRKACAP17612 351 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 MNDAP41218 407 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 PTGFRP43088 359 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 KIR3DL2P43630 455 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 CDX1P47902 265 aaPredicted RBP5.72□□□□□ -1.49
YBX3-209ENST00000540747 RBP2P50120 134 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 DEFA1P59665 94 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 DEFA3P59666 94 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 PAX5Q02548 391 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 AESQ08117 197 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 PDZK1IP1Q13113 114 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 DIAPH2-AS1Q14236 149 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 KIR2DS1Q14954 304 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 DEFB136Q30KP8 78 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 C9orf66Q5T8R8 295 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 C12orf73Q69YU5 71 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 UTS2BQ765I0 119 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 MEPCEQ7L2J0 689 aaKnown RBP5.72□□□□□ -1.49
YBX3-209ENST00000540747 TRAPPC6BQ86SZ2 158 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 PRSS35Q8N3Z0 413 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 DRAM1Q8N682 238 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 OR8J1Q8NGP2 316 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 OR56B4Q8NH76 319 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 OR9G1Q8NH87 305 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 PP6455Q8WZ26 134 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 ADAT3Q96EY9 351 aaPredicted RBP5.72□□□□□ -1.49
YBX3-209ENST00000540747 BORCS8Q96FH0 119 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 FAM210AQ96ND0 272 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 MGLLQ99685 303 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 ASCL2Q99929 193 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 SLIRPQ9GZT3 109 aaKnown RBP5.72□□□□□ -1.49
YBX3-209ENST00000540747 OR51E2Q9H255 320 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 NCOR1P1Q9H4R4 102 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 EXOSC4Q9NPD3 245 aaKnown RBP5.72□□□□□ -1.49
YBX3-209ENST00000540747 TVP23BQ9NYZ1 205 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 LINC00527Q9UJ94 153 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 SSR3Q9UNL2 185 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 GTF2A1LQ9UNN4 478 aa5.72□□□□□ -1.49
YBX3-209ENST00000540747 KBTBD11-OT1A0A1B0GTJ5 212 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 LOC107986453A0A1B0GWG9 222 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 SERPINE3A8MV23 424 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 NPIPB11E5RHQ5 1161 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 ZNF670-ZNF695F2Z2N8 137 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 J3QR06 171 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 M0R129 80 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 SLC33A1O00400 549 aaPredicted RBP5.71□□□□□ -1.5
YBX3-209ENST00000540747 MYL12BO14950 172 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 UPK1BO75841 260 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 CALCBP10092 127 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 PSMA1P25786 263 aaKnown RBP5.71□□□□□ -1.5
YBX3-209ENST00000540747 GPR12P47775 334 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 ATP1B3P54709 279 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 PRRX1P54821 245 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 FOXE3Q13461 319 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 CDK5R1Q15078 307 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 SPANXN2Q5MJ10 180 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 ASPHD1Q5U4P2 390 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 RNLSQ5VYX0 342 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 NXNL2Q5VZ03 156 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 LCNL1Q6ZST4 164 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 SLC35E3Q7Z769 313 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 OR8H3Q8N146 312 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 TCEANCQ8N8B7 351 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 POC5Q8NA72 575 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 ZBTB8BQ8NAP8 495 aaPredicted RBP5.71□□□□□ -1.5
YBX3-209ENST00000540747 CHST4Q8NCG5 386 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 OR4D6Q8NGJ1 314 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 OR51T1Q8NGJ9 327 aa5.71□□□□□ -1.5
YBX3-209ENST00000540747 OR5M8Q8NGP6 311 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms