RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 FKBP1BP68106 108 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 SHISA6Q6ZSJ9 500 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 HOGA1Q86XE5 327 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 IMMP2LQ96T52 175 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 A0A1W2PP11 408 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 F5H697 171 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 ISG15P05161 165 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 EIF3IQ13347 325 aaKnown RBP7.71□□□□□ -1.18
YBX3-208ENST00000540447 ZNF542PQ5EBM4 170 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 CFAP161Q6P656 301 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 RTN4RL2Q86UN3 420 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 ZDHHC23Q8IYP9 409 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 BCORP1Q8N888 145 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 TMEM230Q96A57 120 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 PGLYRP3Q96LB9 341 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 NEU1Q99519 415 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 MKRN2OSH3BPM6 223 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 LINC01387J3KSC0 135 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 IQCF3P0C7M6 154 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 CA6P23280 308 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 RRADP55042 308 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 KIAA0040Q15053 153 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 CST6Q15828 149 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 THSD4Q6ZMP0 1018 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 STXBP6Q8NFX7 210 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 EPHX3Q9H6B9 360 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 MED29Q9NX70 200 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 NKX6-3A6NJ46 265 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 VENTXO95231 258 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 C1QAP02745 245 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 CD22P20273 847 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 OPRK1P41145 380 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 NTHL1P78549 312 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 TMEM25Q86YD3 366 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 TCEAL8Q8IYN2 117 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 GBGT1Q8N5D6 347 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 POC1AQ8NBT0 407 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 TMEM45BQ96B21 275 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 COX11Q9Y6N1 276 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 KBTBD11-OT1A0A1B0GTJ5 212 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 LSM6P62312 80 aaKnown RBP7.7□□□□□ -1.18
YBX3-208ENST00000540447 FXYD3Q14802 87 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 GAGE13Q4V321 117 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 SAMD5Q5TGI4 173 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 MRAP2Q96G30 205 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 TSPAN32Q96QS1 320 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 ST20Q9HBF5 79 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 PLAC1Q9HBJ0 212 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.7□□□□□ -1.18
YBX3-208ENST00000540447 SIRT4Q9Y6E7 314 aaPredicted RBP7.7□□□□□ -1.18
YBX3-208ENST00000540447 PDCD6O75340 191 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 ZFAND5O76080 213 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 MPZL1O95297 269 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 IGFBP7Q16270 282 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 FAM19A2Q8N3H0 131 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 MUCL1Q96DR8 90 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 APOOQ9BUR5 198 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 SNHG12Q9BXW3 62 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 LYRM4Q9HD34 91 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 DUSP13Q9UII6 198 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 TIMM10BQ9Y5J6 103 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 NPTNQ9Y639 398 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 CHD4Q14839 1912 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 M0QZ24 198 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 GDF1P27539 372 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 SELENOTP62341 195 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 TMEM164Q5U3C3 297 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 ZNF324BQ6AW86 544 aaPredicted RBP7.7□□□□□ -1.18
YBX3-208ENST00000540447 PLXDC1Q8IUK5 500 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 GAPTQ8N292 157 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 OR8G5Q8NG78 346 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 GJD4Q96KN9 370 aaPredicted RBP7.7□□□□□ -1.18
YBX3-208ENST00000540447 APOBEC3BQ9UH17 382 aaKnown RBP7.7□□□□□ -1.18
YBX3-208ENST00000540447 ST6GALNAC2Q9UJ37 374 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 TRAV8-4A0A0B4J246 113 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 A0A0G2JMM0 328 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 A0A1W2PPB8 328 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 KIR3DP1A8MWS1 328 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 TMEM238C9JI98 176 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 CDC42EP2O14613 210 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 HYAL3O43820 417 aaPredicted RBP7.7□□□□□ -1.18
YBX3-208ENST00000540447 SCCPDHQ8NBX0 429 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 C11orf40Q8WZ69 217 aa7.7□□□□□ -1.18
YBX3-208ENST00000540447 A0A087WUJ7 227 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 A0A1W2PPC4 97 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 FFAR1O14842 300 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 FCGR3BO75015 233 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 EPPINO95925 133 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 RTP5Q14D33 572 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 OR8B8Q15620 311 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 FAM110CQ1W6H9 321 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 CD200R1LQ6Q8B3 271 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 TOX2Q96NM4 488 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 A0A0B4J2E0 115 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 A0A1B0GX12 115 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 RBFOX2O43251 390 aaKnown RBP eCLIP7.69□□□□□ -1.18
YBX3-208ENST00000540447 PNLIPP16233 465 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 CDKN1BP46527 198 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 ZNF141Q15928 474 aa7.69□□□□□ -1.18
YBX3-208ENST00000540447 LINC00696Q6ZRV3 163 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms